Jatropha Genome Database

JcCA0267571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0267571.10 - phase: 2 /partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024207001 assembled CDS                                       451   e-127
GSVIVT01021426001 assembled CDS                                       189   1e-48
GSVIVT01001046001 assembled CDS                                       187   4e-48
GSVIVT01001119001 assembled CDS                                       181   2e-46
GSVIVT01028118001 assembled CDS                                       180   5e-46
GSVIVT01025535001 assembled CDS                                       159   2e-39
GSVIVT01003253001 assembled CDS                                       150   6e-37
GSVIVT01022631001 assembled CDS                                       137   7e-33
GSVIVT01022626001 assembled CDS                                        58   4e-09

>GSVIVT01024207001 assembled CDS
          Length = 834

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/254 (87%), Positives = 236/254 (92%), Gaps = 9/254 (3%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           FADKQIVRLQETPD+IPEGGTPHTVSLLMHDKLVDA KPGDRVEVTGIYRAMSVRVGPTQ
Sbjct: 308 FADKQIVRLQETPDDIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQ 367

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEED--IQFDDAKIQQLKELSK 118
           RT      TYIDCLH+KK DKSRM AEDPMEV+NGS + EED  + ++D K+ QLKELSK
Sbjct: 368 RT------TYIDCLHLKKTDKSRMQAEDPMEVENGSGRNEEDTLLGYED-KVAQLKELSK 420

Query: 119 QPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSK 178
           QPDIYDRLT+SLAPNIWELDDVK+GLLCQLFGG+ALKLPSGASFRGDINILLVGDPGTSK
Sbjct: 421 QPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLPSGASFRGDINILLVGDPGTSK 480

Query: 179 SQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEF 238
           SQLLQYIHKLSPRGIYTSGRGSSAVGLTAYV+KDPETGETVLESGALVLSDRGICCIDEF
Sbjct: 481 SQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEF 540

Query: 239 DKMSEKCRSMLHEV 252
           DKMS+  RSMLHEV
Sbjct: 541 DKMSDNARSMLHEV 554


>GSVIVT01021426001 assembled CDS
          Length = 776

 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 153/252 (60%), Gaps = 20/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + D Q + +QE P+    G  P TV +++ D LVD+ KPGDRV + GIY+A+    G ++
Sbjct: 189 YKDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKAIP---GKSK 245

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
            +V  +F+T +   ++   +K    A  P+              +    ++ +K ++++ 
Sbjct: 246 GSVNGVFRTVLIANNVSLLNKE---ANTPI--------------YTPEDLKHIKSIAERD 288

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           D  D L  SLAP+I+    +K+ ++  + GG    L +G   RGDIN+++VGDP  +KSQ
Sbjct: 289 DTLDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQ 348

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LL+ I  ++P  I T+GRGSS VGLTA V+ D ETGE  LE+GA+VL+DRG+ CIDEFDK
Sbjct: 349 LLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK 408

Query: 241 MSEKCRSMLHEV 252
           M+++ R  +HEV
Sbjct: 409 MNDQDRVAIHEV 420


>GSVIVT01001046001 assembled CDS
          Length = 732

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 148/253 (58%), Gaps = 16/253 (6%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRA-MSVRVGPT 59
           + D+Q ++LQE P+++P G  P  + L +   LV  + PG R+ + GIY    +     +
Sbjct: 223 YVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSTS 282

Query: 60  QRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQ 119
            +   ++ + YI  + I++A+++   +  P               F    +++ K+ + +
Sbjct: 283 HKGAVAVRQPYIRVVGIEEANEAN--SRGPA-------------AFTSEDMEEFKKFASE 327

Query: 120 PDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKS 179
            D Y R+   +AP+I+  DDVK+ + C LFGG+   LP G   RGDIN+LL+GDP T+KS
Sbjct: 328 ADAYKRICSKIAPSIYGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKS 387

Query: 180 QLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFD 239
           Q L+++ K +P  +YTSG+GSSA GLTA V +D  T E  LE GA+VL+D G+ CIDEFD
Sbjct: 388 QFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDNSTREFYLEGGAMVLADGGVVCIDEFD 447

Query: 240 KMSEKCRSMLHEV 252
           KM  + R  +HE 
Sbjct: 448 KMRAEDRVAIHEA 460


>GSVIVT01001119001 assembled CDS
          Length = 954

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 152/252 (60%), Gaps = 18/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + + Q + LQE+P  +P G  P    +++ + L+D  +PG+ +EVTGIY   +  +    
Sbjct: 414 YRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIY-TNNFDLSLNT 472

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
           +    +F T ++  ++ K            ++ +  +  +ED +       ++++L+K P
Sbjct: 473 KNGFPVFATVVEANYVTKK----------QDLFSAYKLTQEDKE-------EIEKLAKDP 515

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
            I +R+ KS+AP+I+  +D+K  +   +FGG    +      RGDIN+LL+GDPGT+KSQ
Sbjct: 516 RIGERIVKSIAPSIYGHEDIKTAMALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQ 575

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
            L+Y+ K   R +YT+G+G+SAVGLTA V KDP T E  LE GALVL+D+GIC IDEFDK
Sbjct: 576 FLKYVEKTGQRAVYTTGKGASAVGLTASVHKDPVTREWTLEGGALVLADKGICLIDEFDK 635

Query: 241 MSEKCRSMLHEV 252
           M+++ R  +HE 
Sbjct: 636 MNDQDRVSIHEA 647


>GSVIVT01028118001 assembled CDS
          Length = 718

 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 148/260 (56%), Gaps = 34/260 (13%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIY--------RAM 52
           F   Q  ++QE  + +P+G  P T+++ +  +L   V PGD VE++GI+        RAM
Sbjct: 223 FLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAM 282

Query: 53  SVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQ 112
             R G     V   +   +   H KK  +   L  D  E                    Q
Sbjct: 283 --RAG----LVADTYLEAMSVTHFKKKYEEYELRRDEEE--------------------Q 316

Query: 113 LKELSKQPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVG 172
           +  L++  DIY++L +SLAP I+  +DVK+ LL  L G    KL  G   RGD++I L+G
Sbjct: 317 IARLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGAPHRKLKDGMKIRGDLHICLMG 376

Query: 173 DPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGI 232
           DPG +KSQLL++I  ++PRG+YT+GRGSS VGLTA V KDP T E VLE GALVL+D GI
Sbjct: 377 DPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGI 436

Query: 233 CCIDEFDKMSEKCRSMLHEV 252
           C IDEFDKM +  R+ +HEV
Sbjct: 437 CAIDEFDKMEDSDRTAIHEV 456


>GSVIVT01025535001 assembled CDS
          Length = 553

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 19/248 (7%)

Query: 16  IPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRA----MSVRVGPTQRTVKSLFKTYI 71
           I +G  P TV   + + LVDA  PGD V VTGI R     M +  G ++   + LF  Y+
Sbjct: 6   ILKGRVPRTVECELTEDLVDACIPGDVVTVTGIIRQINNYMDIGGGKSKNKNQGLFYLYL 65

Query: 72  DCLHIKKADKSRMLAEDPMEVDNGSRQVE--EDIQFDDAKIQQLKELSKQ--PDIYDRLT 127
           + + IK + KS+ ++ED  + +  +R  E  +   F    ++ + + S++   D + ++ 
Sbjct: 66  EAVSIKNS-KSQYISEDLQDSNADARATELLDLFSFSPRDLEFIVKFSEEHGSDRFRQIL 124

Query: 128 KSLAPNIWELDDVKRGLLCQLFGG------NALKLPSGASFRGDINILLVGDPGTSKSQL 181
           +S+ P+I+  + VK G+   LFGG      +  K+P     RGDI+I++VGDPG  KSQL
Sbjct: 125 QSICPSIYGHELVKAGITLALFGGVQKYSTDKNKVP----VRGDIHIIVVGDPGLGKSQL 180

Query: 182 LQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKM 241
           LQ    +SPRGIY  G  ++  GLT  V KDP T +   E+GA+VL+DRG+CCIDEFDKM
Sbjct: 181 LQAAAAISPRGIYVCGNATTNAGLTVAVVKDPMTSDYAFEAGAMVLADRGLCCIDEFDKM 240

Query: 242 SEKCRSML 249
           S + +S+L
Sbjct: 241 SAEHQSLL 248


>GSVIVT01003253001 assembled CDS
          Length = 822

 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 99/149 (66%)

Query: 104 QFDDAKIQQLKELSKQPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFR 163
           Q    ++ +++ +   PD +++L  S+AP ++   D+KR +L  L GG       G + R
Sbjct: 363 QVAQEELDEIQRMRNTPDFFNKLVDSIAPTVFGHQDIKRAILLMLLGGVHKCTHEGINLR 422

Query: 164 GDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESG 223
           GDIN+ +VGDP  +KSQ L+Y   L PR +YTSG+ SSA GLTA V+K+PETGE  +E+G
Sbjct: 423 GDINVCIVGDPSCAKSQFLKYTSGLVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAG 482

Query: 224 ALVLSDRGICCIDEFDKMSEKCRSMLHEV 252
           AL+L+D G+CCIDEFDKM  + +  +HE 
Sbjct: 483 ALMLADNGVCCIDEFDKMDIRDQVAIHEA 511


>GSVIVT01022631001 assembled CDS
          Length = 665

 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 17/249 (6%)

Query: 3   DKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQRT 62
           D Q +++QE+   +  G  P ++ +++ D LVD VK GD + VTGI   ++ +     + 
Sbjct: 198 DYQEIKIQESVQVLGVGAIPRSIPVILQDDLVDIVKAGDDIIVTGI---LTAKWSSDLKD 254

Query: 63  VKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQPDI 122
           V+      +   H+++ ++ R   + P EV    +Q   D  F D  ++           
Sbjct: 255 VRCDLDPVLIANHVRRTNELRSDMDIPDEVIMKFKQFWSD--FKDTPLKG---------- 302

Query: 123 YDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLL 182
            + + + + P ++ L  VK  +   L GG      SG   RG+ ++LLVGDPGT KSQ L
Sbjct: 303 RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFL 362

Query: 183 QYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMS 242
           ++  KLS R + T+G GS++ GLT    +D   GE +LE+GALVL+D G+CCIDEF+ M 
Sbjct: 363 KFAAKLSNRSVITTGFGSTSAGLTVTAVRD--GGEWMLEAGALVLADGGLCCIDEFNSMR 420

Query: 243 EKCRSMLHE 251
           E  R+ +HE
Sbjct: 421 EHDRATIHE 429


>GSVIVT01022626001 assembled CDS
          Length = 425

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 124 DRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPG--TSKSQL 181
           + + + + P ++ L  VK  +   L GG      S    RG  ++LLVGDP         
Sbjct: 8   NAILRGICPQVFGLFIVKLAIALTLIGGVQHVDASRTKVRGKSHLLLVGDPVDLLGSVCF 67

Query: 182 LQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKM 241
           L +I +L    +  S      +      +     GE +LE+ ALVL D G+CCIDEFD M
Sbjct: 68  LNFIARLEM--LEVSIFFLFHLFFRVLTTFKEFLGEWMLEARALVLVDGGLCCIDEFDSM 125

Query: 242 SEKCRSMLHEVGHIFL 257
            E  R+ +HE   + L
Sbjct: 126 REHDRATIHEAMEMIL 141