Jatropha Genome Database

JcCA0266291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0266291.10 - phase: 0 /TE/partial
         (373 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                        62   4e-10

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 289  NAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDDHFKHLKTFCMVIRQNGLALSKT 347
            N P+ F  +MN +F  Y  +F IV++DD+LI+S+++++H +HL T    +R++ L     
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 348  KMDLFKTKIRFLGHYIEQG 366
            K + + T++ FLGH + + 
Sbjct: 1032 KSEFWLTEVNFLGHVVSEA 1050