Jatropha Genome Database

JcCA0265621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265621.10 - phase: 0 /partial
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033233001 assembled CDS                                       286   2e-78
GSVIVT01001463001 assembled CDS                                       284   1e-77

>GSVIVT01033233001 assembled CDS
          Length = 463

 Score =  286 bits (733), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/162 (90%), Positives = 154/162 (95%)

Query: 1   ESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEL 60
           ESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEL
Sbjct: 302 ESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEL 361

Query: 61  NRDMGDSISGKGMIQGVSAVKAFYELLSQPSLNVLHPDEKKPVAPVELCPILKTLYKILI 120
           + DMGDSISGKGMIQGVSAV AFYELLSQ SL+VLHP+E K VAPVELCPILKTLY+ILI
Sbjct: 362 SLDMGDSISGKGMIQGVSAVGAFYELLSQSSLSVLHPEENKHVAPVELCPILKTLYRILI 421

Query: 121 SREHSSQAILQALRDENLNDPRERIEIAQSHAFYRPSLLGQP 162
           +RE +SQ ILQALRDE LNDPRERIEIAQ+HAFYRPSLLGQP
Sbjct: 422 TRELASQGILQALRDETLNDPRERIEIAQTHAFYRPSLLGQP 463


>GSVIVT01001463001 assembled CDS
          Length = 465

 Score =  284 bits (727), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 150/161 (93%)

Query: 1   ESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEL 60
           ESATSKSVYFAHCTSEMIFITHLL+E+PEKL+GPLLADTYVTLLKGRNAWYGQ LA+GEL
Sbjct: 303 ESATSKSVYFAHCTSEMIFITHLLSEDPEKLSGPLLADTYVTLLKGRNAWYGQKLAEGEL 362

Query: 61  NRDMGDSISGKGMIQGVSAVKAFYELLSQPSLNVLHPDEKKPVAPVELCPILKTLYKILI 120
           + +MGDSI GKGMIQG+SAVKAFYELLSQ  L++LH +E KPVAPVELCPILKTLY ILI
Sbjct: 363 SLEMGDSIKGKGMIQGISAVKAFYELLSQSCLSILHSEENKPVAPVELCPILKTLYNILI 422

Query: 121 SREHSSQAILQALRDENLNDPRERIEIAQSHAFYRPSLLGQ 161
           +RE SSQAILQALRD+ +NDPR+RI +AQ+HAFYRPSLLGQ
Sbjct: 423 AREASSQAILQALRDQTMNDPRDRIAMAQTHAFYRPSLLGQ 463