Jatropha Genome Database

JcCA0265561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265561.10 + phase: 2 /partial
         (128 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003194001 assembled CDS                                       167   1e-42
GSVIVT01003189001 assembled CDS                                       166   2e-42

>GSVIVT01003194001 assembled CDS
          Length = 407

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 90/104 (86%), Gaps = 1/104 (0%)

Query: 1   LYRSSEQTNQRILFDIEPFGRHLGTGGQDGLVHIYDLQTGQWTSSFQAAADTVSGFSFHP 60
           LYRS+E TNQRI FDIEP GRHLGTGGQDGLVHIYDLQTGQW S FQAA+DT++GFSFHP
Sbjct: 304 LYRSTETTNQRIFFDIEPGGRHLGTGGQDGLVHIYDLQTGQWISCFQAASDTINGFSFHP 363

Query: 61  FLPMAASSSGHRRFQVPDDGHE-NLLLNDDENCASVWSFFYASA 103
           FLPMAASSSGHRRF +P+   + +L ++ DENCASVWSF Y S+
Sbjct: 364 FLPMAASSSGHRRFGIPESNEDLSLGISGDENCASVWSFSYLSS 407


>GSVIVT01003189001 assembled CDS
          Length = 144

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 90/104 (86%), Gaps = 1/104 (0%)

Query: 1   LYRSSEQTNQRILFDIEPFGRHLGTGGQDGLVHIYDLQTGQWTSSFQAAADTVSGFSFHP 60
           LYRS+E TNQRI FDIEP GRHLGTGGQDGLVHIYDLQTGQW S FQAA+DT++GFSFHP
Sbjct: 41  LYRSTETTNQRIFFDIEPGGRHLGTGGQDGLVHIYDLQTGQWISCFQAASDTINGFSFHP 100

Query: 61  FLPMAASSSGHRRFQVPDDGHE-NLLLNDDENCASVWSFFYASA 103
           FLPMAASSSGHRRF +P+   + +L ++ DENCASVWSF Y S+
Sbjct: 101 FLPMAASSSGHRRFGIPESNEDLSLGISGDENCASVWSFSYLSS 144