Jatropha Genome Database

JcCA0265291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265291.10 - phase: 0 /pseudo/partial
         (165 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024086001 assembled CDS                                       137   3e-33
GSVIVT01024952001 assembled CDS                                        88   2e-18
GSVIVT01016559001 assembled CDS                                        86   6e-18

>GSVIVT01024086001 assembled CDS
          Length = 256

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 73/86 (84%), Gaps = 1/86 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           DVVVAPPFVY+DQVK+SLTDRIEIS QNSWV KGGAFTGEISVEQLKDIGC WVILGHSE
Sbjct: 39  DVVVAPPFVYLDQVKNSLTDRIEISAQNSWVGKGGAFTGEISVEQLKDIGCNWVILGHSE 98

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGVN 125
           RRH+IGE D+  IG K  +   QG+ 
Sbjct: 99  RRHVIGEDDQF-IGKKAAYALSQGLK 123


>GSVIVT01024952001 assembled CDS
          Length = 254

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           +VVV+PPFV++  VKS L    +++ QN W+ +GGAFTGEIS E L ++G  WVILGHSE
Sbjct: 39  EVVVSPPFVFLPLVKSLLRSDFQVAAQNCWIRRGGAFTGEISAEMLVNLGIPWVILGHSE 98

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGVN 125
           RR ++ E +E  +G K  +   QG+ 
Sbjct: 99  RRSLLAESNEF-VGDKVAYALSQGLK 123


>GSVIVT01016559001 assembled CDS
          Length = 254

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           +VVV+PPFV++  VKS+L     ++ QN WV KGGAFTGEIS E L ++G  WVI+GHSE
Sbjct: 39  EVVVSPPFVFLPLVKSTLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVIIGHSE 98

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGV 124
           RR ++ E +E  +G K  +   +G+
Sbjct: 99  RRLLLNESNEF-VGEKVAYALSKGL 122