Jatropha Genome Database

JcCA0265151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265151.10 + phase: 0 
         (307 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023937001 assembled CDS                                       271   3e-73
GSVIVT01023936001 assembled CDS                                       260   7e-70
GSVIVT01008882001 assembled CDS                                        98   5e-21
GSVIVT01019039001 assembled CDS                                        47   9e-06

>GSVIVT01023937001 assembled CDS
          Length = 357

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 157/194 (80%), Gaps = 3/194 (1%)

Query: 77  FKC---TTSGQCNALIDYVAPNSTTISDIRTLFSIKNLRSILGANNLPLSTSPNQTIAAA 133
           F C   T S  C+ALIDYV+PN+TT+S I+TLF +KNLR++LGAN+LP STSPNQ++AA 
Sbjct: 26  FTCNSTTRSTTCSALIDYVSPNTTTLSAIQTLFDVKNLRTLLGANSLPTSTSPNQSVAAK 85

Query: 134 QTIKIPFPCKCSNGTGISNKKPIYTVQPGDGLDHIARDVFSALVTYEQIAAVNNIPDVNK 193
             I IPF C+CSNGTGISN +P+YTVQ  DGL HIA +VF+ LVTY++I AVNNI D N 
Sbjct: 86  DKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANL 145

Query: 194 ILVGQELQIPLPCSCDDVGGEKVVHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSITNAS 253
           I VGQEL IPLPCSCD+V G KVVHYGHVVE+GSS++LIA+EYGTT  TL+ LN IT+  
Sbjct: 146 IEVGQELWIPLPCSCDEVNGSKVVHYGHVVEAGSSVELIAEEYGTTQETLLRLNGITDPK 205

Query: 254 SLKAGQVLDVPLKG 267
           +L+AG VLDVPLK 
Sbjct: 206 NLQAGAVLDVPLKA 219


>GSVIVT01023936001 assembled CDS
          Length = 367

 Score =  260 bits (664), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 152/191 (79%)

Query: 77  FKCTTSGQCNALIDYVAPNSTTISDIRTLFSIKNLRSILGANNLPLSTSPNQTIAAAQTI 136
           FKC++   CNAL+ YV+PN+TT+S I+TLF +KN R++LGAN+LP ST  NQ++AA   I
Sbjct: 17  FKCSSGPTCNALVGYVSPNTTTLSAIQTLFGVKNFRTLLGANSLPASTPTNQSVAAKDKI 76

Query: 137 KIPFPCKCSNGTGISNKKPIYTVQPGDGLDHIARDVFSALVTYEQIAAVNNIPDVNKILV 196
            IPF C+CSNGTGISN +P+YTVQ  DGL HIA +VF+ LVTY++I AVNNI D N I V
Sbjct: 77  VIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLIEV 136

Query: 197 GQELQIPLPCSCDDVGGEKVVHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSITNASSLK 256
           GQEL IPLPCSCD+V   KVVHYGHVVESGSS+  IA++YGTT  TL+ LN+IT+  +LK
Sbjct: 137 GQELWIPLPCSCDEVNESKVVHYGHVVESGSSVAEIAEKYGTTEETLLELNNITDPKNLK 196

Query: 257 AGQVLDVPLKG 267
           AG VLDVPLK 
Sbjct: 197 AGDVLDVPLKA 207


>GSVIVT01008882001 assembled CDS
          Length = 408

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 79  CTTSGQCNALIDYVAPNSTTISDIRTLFSIKNLRSILGANNLPLSTS--PNQTIAAAQTI 136
           C+ S  CNA++ Y       +S++ TLF +  + +IL AN + +S     N  + +   +
Sbjct: 23  CSNSDSCNAMVGYTLYTDLKVSEVATLFQVDPI-AILTANAIDISYPDVENHILPSQLFL 81

Query: 137 KIPFPCKCSNGTGISNKKPIYTVQPGDGLDHIARDVFSALVTYEQIAAVNNIPDVNKILV 196
           KIP  C C +G   S     Y  +P D L  IA  +++ LV+ +Q+   N+I D + + V
Sbjct: 82  KIPIYCSCVDGIRKSVTT-RYKTRPSDTLSSIADSIYAGLVSADQLREANSISDPSVLDV 140

Query: 197 GQELQIPLPCSCDDVGGEKVV---HYGHVVESGSSLDLIAQEYGTTMTTLMTLNSITNAS 253
           GQ L +PLPC+C + G + ++   +  +VV+   +L  IA  Y TT++ LMT+N++  + 
Sbjct: 141 GQTLVVPLPCTCFN-GTDNLLPATYLSYVVKVDDTLTGIASRYSTTISDLMTVNAM-GSP 198

Query: 254 SLKAGQVLDVPLKG 267
           ++KAG +L VPL  
Sbjct: 199 AIKAGDILAVPLPA 212


>GSVIVT01019039001 assembled CDS
          Length = 590

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 77  FKCTTS--GQCNALIDYVA--PNSTTISDIRTLFSIKNLRSILGANNLPLSTSPNQTIAA 132
           F CTT     C   + Y A  P    + +I  LF I  L SI  A+NL    S    ++ 
Sbjct: 32  FSCTTDSPASCQTYVIYRAQAPGFLDVGNISDLFGISRL-SIAEASNL---ASEEARLSP 87

Query: 133 AQTIKIPFPCKCSNGTGISNKKPIYTVQPGDGLDHIARDVFSALVTYEQIAAVNNIPDVN 192
            Q + +P  C C+     +N    Y ++  D    ++  VF  L  Y  + A+N   +  
Sbjct: 88  DQLLLVPILCSCTGNHYFANIT--YKIKTDDSFYFVSVTVFENLTNYNAVEALNPGLEPT 145

Query: 193 KILVGQELQIPLPCSC 208
            + VG E+  PL C C
Sbjct: 146 TLQVGVEVVFPLFCKC 161