Jatropha Genome Database

JcCA0264961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264961.10 - phase: 2 /TE/partial
         (240 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025216001 assembled CDS                                       266   5e-72
GSVIVT01035901001 assembled CDS                                        62   2e-10
GSVIVT01012117001 assembled CDS                                        48   4e-06

>GSVIVT01025216001 assembled CDS
          Length = 1452

 Score =  266 bits (681), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 137/255 (53%), Positives = 174/255 (68%), Gaps = 21/255 (8%)

Query: 1   CCVGKGCQRSYHLSCLNPPLVTAPPGVWHCTFCVEKKMNMGVHSVSKGVESVWAVREV-A 59
           CC GKGC+RSYHL+CL+PPL   PPG+WHC  CV+KK  +GVH+VS+GVES+W  REV  
Sbjct: 458 CCDGKGCKRSYHLACLDPPLGEIPPGIWHCMLCVKKKTELGVHAVSEGVESIWDTREVEL 517

Query: 60  SDNEGKQKHKEYLVKHQGLAHVHNLWIPEKELLLEAPTRVAKFNRRSQA---TSWKTEWS 116
              EG QK K+Y VK++GLAHVHN WIPE +LLLEAP+ VAKFNR++Q      +K EW+
Sbjct: 518 PSAEGVQKQKQYFVKYKGLAHVHNHWIPESQLLLEAPSLVAKFNRKNQVKYFALYKLEWT 577

Query: 117 IPQRLLQKRQLSFSKHRTNG---------------WLVKWTGLSYDHATWELENASFLTS 161
           +P RLLQKR L  +K  ++G               WLVKW GL Y+HATWELENASFL S
Sbjct: 578 VPHRLLQKRLLMPTKQ-SDGYYTGRAGDIPDCLYEWLVKWRGLGYEHATWELENASFLNS 636

Query: 162 PEARKLIQDYEDGHAKAERKDYENCHDKADKMQSLSQANELSSGDSPGAYNHYLKYVNKL 221
           PEA+ LI++YE+   KA+     +  DK  K  SL + ++L    S G  +++L  VNKL
Sbjct: 637 PEAQSLIREYENRRRKAKSASDPSITDKGRKA-SLVKLSKLPGAGSIGIDDNHLSCVNKL 695

Query: 222 REHWYKGHNAIVFYD 236
           RE+W+KG NAIV  D
Sbjct: 696 RENWHKGLNAIVIDD 710


>GSVIVT01035901001 assembled CDS
          Length = 1356

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 103/248 (41%), Gaps = 28/248 (11%)

Query: 7   CQRSYHLSCLNPPLVTAPPGVWHCTFCVEKKMNMGVHSVSKGVESVWAVREVASDNEGKQ 66
           C  +YH  CL PPL    P  W C  CV   +N     +   +    A    AS    KQ
Sbjct: 69  CTYAYHPKCLLPPLKAPLPSNWRCPQCV-SPLNDIDKILDCEMRPTVAGDSDASKLGSKQ 127

Query: 67  KH-KEYLVKHQGLAHVHNLWIPEKELLL------EAPTRVAKFNRRSQA--------TSW 111
              K+YLVK +GL+++H  W+PEKE +          T+V  FNR+  +         + 
Sbjct: 128 IFVKQYLVKWKGLSYLHCTWVPEKEFIKAFKTHPRLKTKVNNFNRQMASNNNSEEDFVAV 187

Query: 112 KTEWSIPQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWELENASFLTSPEARKL--IQ 169
           + EW+   R++  R           +LVKW  LSYD   WE E+      PE  +   IQ
Sbjct: 188 RPEWTTVDRIIACR----GNDDEREYLVKWKELSYDECYWEFESDISAFQPEIERFNKIQ 243

Query: 170 DYEDGHA----KAERKDYENCHDKADKMQSLSQANELSSGDSPGAYNHYLKYVNKLREHW 225
                 +    K   +D  +   K  + Q    + E  SG S   Y   L+ +N LR  W
Sbjct: 244 SRSRKLSSSKQKVTIRDISDSKRKQREFQQFEHSPEFLSGGSLHPYQ--LEGLNFLRFSW 301

Query: 226 YKGHNAIV 233
            K  + I+
Sbjct: 302 GKQTHVIL 309


>GSVIVT01012117001 assembled CDS
          Length = 1638

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 1   CCVGKGCQRSYHLSCLNPPLVTAPPGVWHCTFC---VEKKMN 39
           CC    C R+YHL CLNPPL   P G W C  C   +EKK++
Sbjct: 89  CC--DSCPRTYHLQCLNPPLKRIPNGKWQCPKCFCSIEKKLD 128