Jatropha Genome Database

JcCA0264441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264441.10 - phase: 2 /pseudo/partial
         (203 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011104001 assembled CDS                                       147   5e-36
GSVIVT01017883001 assembled CDS                                        94   4e-20
GSVIVT01009710001 assembled CDS                                        51   4e-07
GSVIVT01028842001 assembled CDS                                        49   2e-06

>GSVIVT01011104001 assembled CDS
          Length = 448

 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 100/184 (54%), Gaps = 10/184 (5%)

Query: 28  RVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXX---------XXXXXXXXXGDSELNTPL 78
           RV +DMPLYDILNEFQKG                                 G+S+  TPL
Sbjct: 244 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKNKNPLPKGDGERFEENKVANGNSQYTTPL 303

Query: 79  LNKHDDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLED 138
           L   +DKSE+V++DI+K  +PT   +    + NG  TN +PHL             TLED
Sbjct: 304 LANDNDKSENVVVDIDKVPKPTNTNKQTPSQQNGATTNSLPHLPEDIEDGEVIGIITLED 363

Query: 139 VFEELLQEEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPAGGQGKQNNIP 198
           VFEELLQEEIVDETDVYVDVHKRI              PS+RRL+GQKPAGGQ +Q   P
Sbjct: 364 VFEELLQEEIVDETDVYVDVHKRIRVAAAAAASFVARAPSSRRLTGQKPAGGQSRQGT-P 422

Query: 199 KKSG 202
           KKS 
Sbjct: 423 KKSA 426


>GSVIVT01017883001 assembled CDS
          Length = 474

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 86/176 (48%), Gaps = 28/176 (15%)

Query: 28  RVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXXXXXXXXXXXGDSELNTPLLNKHDDKSE 87
           RV +DMPLYDILNEFQKG                          S +   +  K  +K+ 
Sbjct: 302 RVPADMPLYDILNEFQKG-------------------------SSHMAAVVKPKGRNKNA 336

Query: 88  SVIID--IEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLEDVFEELLQ 145
             ++D  I +  + T      + + +  ATN +P LS            TLEDVFEELLQ
Sbjct: 337 PQVMDGKITEENKITGADSQQS-QHSDAATNGLPRLSEDIEDGEVIGIITLEDVFEELLQ 395

Query: 146 EEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPAGGQGKQNNIPKKS 201
           EEIVDETD +VDVHKRI              PS RRL+G K AGGQ KQ   PKKS
Sbjct: 396 EEIVDETDEFVDVHKRIRVAAAAAASSIARAPSIRRLTGHKGAGGQTKQVQSPKKS 451


>GSVIVT01009710001 assembled CDS
          Length = 524

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 23/88 (26%)

Query: 75  NTPLLNKHDDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXX 134
           + P+  K        I+D+E A  P          PN VA  ++                
Sbjct: 371 SVPVFKKRHRGCSFCILDVENAPLPE-------FPPNEVAVGVI---------------- 407

Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRI 162
           T+EDV EELLQEEI+DETD YV++H RI
Sbjct: 408 TMEDVIEELLQEEILDETDEYVNIHNRI 435


>GSVIVT01028842001 assembled CDS
          Length = 540

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 25/28 (89%)

Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRI 162
           T+EDV EELLQEEI+DETD Y+DVH +I
Sbjct: 413 TMEDVMEELLQEEILDETDEYIDVHNKI 440