Jatropha Genome Database

JcCA0264101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264101.20 - phase: 0 /pseudo/partial
         (309 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008827001 assembled CDS                                       362   e-100
GSVIVT01008829001 assembled CDS                                       356   7e-99
GSVIVT01034237001 assembled CDS                                       263   7e-71
GSVIVT01003954001 assembled CDS                                       247   5e-66
GSVIVT01000173001 assembled CDS                                       115   3e-26
GSVIVT01009387001 assembled CDS                                       111   4e-25
GSVIVT01008828001 assembled CDS                                        96   3e-20

>GSVIVT01008827001 assembled CDS
          Length = 542

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 209/262 (79%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           + +ACR+FLIESG ALFVAFLIN++++SV+ TVC + NL+  ++D+C+DLNLNSASFLL+
Sbjct: 260 INEACRYFLIESGLALFVAFLINVAVVSVSGTVCSADNLSQENLDQCNDLNLNSASFLLK 319

Query: 87  NVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIAPXX 146
           NVLG SS  +YAIAL ASGQSSTITGTYAGQ+IMQGFLD+KM+KW RNLMTR IAI P  
Sbjct: 320 NVLGGSSKVVYAIALFASGQSSTITGTYAGQFIMQGFLDIKMRKWLRNLMTRSIAITPSL 379

Query: 147 XXXXXXXXXXXXXXXXXXXMILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVISWTLG 206
                              MILSFELPFALIPLLKFSS +TKMGP+KNSIY+IVISW LG
Sbjct: 380 IVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSNTKMGPHKNSIYIIVISWILG 439

Query: 207 LMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRKDTVVTY 266
             IIGINIYYLST FV WL+HNNLPKVGNVFIGIIVFPLMAIYI+SVIYLT RKDTVVT+
Sbjct: 440 FGIIGINIYYLSTSFVGWLLHNNLPKVGNVFIGIIVFPLMAIYILSVIYLTTRKDTVVTF 499

Query: 267 IEPVNDEQIGQATMESGLKNLE 288
           IEP  ++   Q  ME+G    +
Sbjct: 500 IEPEKNDPNVQNHMENGFDQTD 521


>GSVIVT01008829001 assembled CDS
          Length = 535

 Score =  356 bits (914), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 172/248 (69%), Positives = 202/248 (81%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           + +ACR+FLIESG AL VAF IN++++SV+ T+C   NL+  ++D+CSDLNLNSASFLL+
Sbjct: 239 VNEACRYFLIESGMALMVAFCINVAVVSVSGTICSVNNLSRENMDQCSDLNLNSASFLLK 298

Query: 87  NVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIAPXX 146
           NVLG SS  +YAIAL ASGQSSTITGTYAGQYIMQGFL+LKMK+W RNLMTRCIAI P  
Sbjct: 299 NVLGGSSKVVYAIALFASGQSSTITGTYAGQYIMQGFLNLKMKRWLRNLMTRCIAITPSL 358

Query: 147 XXXXXXXXXXXXXXXXXXXMILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVISWTLG 206
                              MILSFELPFALIPLLKFSS STKMGP+KNSIYVIV SW LG
Sbjct: 359 IVSIISGSAGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYVIVFSWILG 418

Query: 207 LMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRKDTVVTY 266
             ++GINIYYL+TGFV+WL+HN+LPKVGNVFIGIIVFPLMA+Y+++V+YLTFRKDTVVT+
Sbjct: 419 FGLMGINIYYLATGFVNWLLHNDLPKVGNVFIGIIVFPLMAVYVLAVLYLTFRKDTVVTF 478

Query: 267 IEPVNDEQ 274
           IE   DE 
Sbjct: 479 IEAEKDEH 486


>GSVIVT01034237001 assembled CDS
          Length = 541

 Score =  263 bits (673), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 137/266 (51%), Positives = 183/266 (68%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +++ACRF++IESGFAL VAFLIN+S+I V+  VC S NL   D + C DL+LN ASFLL+
Sbjct: 258 IKEACRFYMIESGFALMVAFLINVSVICVSGAVCSSSNLNLDDQESCKDLDLNKASFLLR 317

Query: 87  NVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIAPXX 146
           NVLG+ SS ++AIALLASGQSSTITGTYAGQY+MQGFLDL+++ W RN +TRC+AI P  
Sbjct: 318 NVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLQPWIRNFLTRCLAIIPSL 377

Query: 147 XXXXXXXXXXXXXXXXXXXMILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVISWTLG 206
                              MILSFELPFALIPLLKF+S  TKMG Y NS  +  I+W +G
Sbjct: 378 IVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSCKTKMGAYVNSTMITAITWIIG 437

Query: 207 LMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRKDTVVTY 266
            +++ INIYYL++ F+  L+H++L  V  VF GII F  M +Y+  + YL FRK+   T+
Sbjct: 438 SLLMAINIYYLASSFIKLLLHSHLKLVAAVFAGIIGFSGMIVYVCGIGYLVFRKNKKATH 497

Query: 267 IEPVNDEQIGQATMESGLKNLEILWR 292
           +  +   + G+ T + G  +++ L R
Sbjct: 498 LLALATAENGELTNDVGGASMDCLPR 523


>GSVIVT01003954001 assembled CDS
          Length = 510

 Score =  247 bits (631), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/236 (51%), Positives = 171/236 (72%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           ++ A ++F+IESG ALF+A LIN++++SV+ +VC + + +  + D C D+ L SASFLL 
Sbjct: 229 IRSASKYFIIESGLALFIALLINVAVVSVSGSVCSNPHASSQNKDHCEDITLESASFLLN 288

Query: 87  NVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIAPXX 146
           N LG  SS +YA++LLASGQSST+TGTYAGQYIMQGFLDLKM+ W RNL+TRCIAIAP  
Sbjct: 289 NALGNWSSKLYAVSLLASGQSSTVTGTYAGQYIMQGFLDLKMRLWLRNLVTRCIAIAPSL 348

Query: 147 XXXXXXXXXXXXXXXXXXXMILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVISWTLG 206
                              MILSFELPFALIPLL+F+S   KMG +++SI V ++SW LG
Sbjct: 349 MVCIIGGSSGAARLIIIASMILSFELPFALIPLLRFTSSKAKMGAHRSSIMVTLLSWLLG 408

Query: 207 LMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRKDT 262
              IGINIY+LS+  + W+ +N++PK G++  G+++FP+M +Y   ++YLT ++++
Sbjct: 409 FGSIGINIYFLSSSLIGWMTNNDIPKTGSILAGVVIFPVMMLYAAMLVYLTTKRES 464


>GSVIVT01000173001 assembled CDS
          Length = 410

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 24/240 (10%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPG--DVDRCSDLNLNSASFL 84
           +Q+A  ++ IES  AL ++F+INL + +V          A G    ++ +++ L +A   
Sbjct: 167 VQEALNYYSIESTVALILSFIINLFVTTV---------FAKGFYGTEQANNIGLVNAGQY 217

Query: 85  LQNVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIA 141
           LQ   G     I   + I LLA+GQSSTITGTYAGQ+IM GFL+L++KKW R L+TR  A
Sbjct: 218 LQEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSCA 277

Query: 142 IAPXXXXXXXXXXXXXXXXXXXXXM--ILSFELPFALIPLLKFSSGSTKMGPYKNSIYVI 199
           I P                     +  + S ++PFALIPLL   S    MG +K    + 
Sbjct: 278 IVPTMIVALVFDTSEDTLDVMNEWLNVLQSIQIPFALIPLLCLVSKEQIMGTFKIGPVLK 337

Query: 200 VISWTLGLMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFR 259
           V++W +  ++I IN Y L   F          +V  + IG  +    A Y+  +IYL FR
Sbjct: 338 VVAWLVAALVIIINGYLLVDFFSS--------EVNGLLIGFFICTFTAAYVAFIIYLVFR 389


>GSVIVT01009387001 assembled CDS
          Length = 414

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 118/235 (50%), Gaps = 20/235 (8%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +Q+A  ++ IES  AL ++F+INL + +V A        A G       + L +A   L+
Sbjct: 170 VQEALNYYSIESTVALLISFMINLFVTTVFAKGFYGTKQADG-------IGLVNAGQYLE 222

Query: 87  NVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIA 143
              G     I   + I LLA+GQSSTITGTYAGQ+IM GFL+L++KKW R L+TR  AI 
Sbjct: 223 EKYGGGVFPILYVWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIV 282

Query: 144 PXXXXXXXXXXXXXXXXXXXXXM--ILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVI 201
           P                     +  + S ++PFALIPLL   S    MG +K    +  +
Sbjct: 283 PTMIVALVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQVMGVFKVGPLLERV 342

Query: 202 SWTLGLMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYL 256
           +WT+  ++I IN Y L   F        + +V  V  G +V    A+Y+  + YL
Sbjct: 343 AWTVAALVIVINGYLLLDFF--------MAEVDGVLFGFLVCAGTALYVAFIFYL 389


>GSVIVT01008828001 assembled CDS
          Length = 203

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 62/75 (82%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           + +ACR+FLIES   LFVAFLIN++++S++ TVC + NL+  ++D+C+DLNLNSASFLL+
Sbjct: 105 INEACRYFLIESVLVLFVAFLINVAVVSMSDTVCSADNLSKENLDQCNDLNLNSASFLLK 164

Query: 87  NVLGRSSSTIYAIAL 101
           NVLG SS  +YAI L
Sbjct: 165 NVLGGSSKVVYAIVL 179