Jatropha Genome Database

JcCA0264101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264101.10 + phase: 0 /partial
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008831001 assembled CDS                                       279   1e-75
GSVIVT01031951001 assembled CDS                                        60   1e-09

>GSVIVT01008831001 assembled CDS
          Length = 675

 Score =  279 bits (713), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/288 (55%), Positives = 186/288 (64%), Gaps = 31/288 (10%)

Query: 1   VAFLASAVGPRVXXXXXXXXXXXXXEDNRM--------------NSERLHSREGSFHGEV 46
           VAFLA+AVGPRV             E+N +              +  R+  +EG  HGE+
Sbjct: 393 VAFLATAVGPRVAAACAHASLIALSEENALAAASGFIIPPEGSGHGNRM--KEGGPHGEL 450

Query: 47  ANS---------IQQKEGQNEAEGGPVSXXXXXXXXXXXXXXXXXXXXXXXDHEEREIQR 97
            NS         IQ   GQN+AE   +                        DHEEREIQR
Sbjct: 451 TNSSQHQDGNIAIQGSWGQNDAEVASLPVEKVRAAAKAGLAAAAMKAKLFADHEEREIQR 510

Query: 98  LSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRIGPAGSTS 157
           LSANIINHQLKRLELKLKQFAEVET LM+ECEQVE+ RQRFAAERAR++STR GP G TS
Sbjct: 511 LSANIINHQLKRLELKLKQFAEVETLLMKECEQVERARQRFAAERARIISTRFGPTGVTS 570

Query: 158 QMNLAGVGPSMVNNNISSNRQQVMPPS-SQPNISGYGNNQQVHPHVSFMQRGQQQPMFPL 216
            MNL GV P++V+NN  +NRQQ++  S SQP+ISGYGNNQQ+HPH+SFM R   QPMF  
Sbjct: 571 PMNLPGVAPALVSNNTGNNRQQIISASPSQPSISGYGNNQQMHPHMSFMPR---QPMFSF 627

Query: 217 GPRLPLAAIQPSSSAPS-NVMFNASGSSQPSLNQ-MLRSVSGPSSSLG 262
           GPRLPLAAIQPSSS PS N MFN SG+SQP+LN  M+R VSG SS LG
Sbjct: 628 GPRLPLAAIQPSSSTPSPNAMFNNSGNSQPTLNHPMMRPVSGTSSGLG 675


>GSVIVT01031951001 assembled CDS
          Length = 983

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 48/68 (70%)

Query: 91  EEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRI 150
           EE +IQ+ +  +I  QL +LE KL  F E+E+ + R  EQ++++RQR   ERA++++ R+
Sbjct: 845 EEDQIQQFATLLIEKQLHKLETKLAFFNEMESVITRVREQMDRSRQRLYHERAQIIAARL 904

Query: 151 GPAGSTSQ 158
           G AGS+S+
Sbjct: 905 GFAGSSSR 912