Jatropha Genome Database

JcCA0263681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0263681.10 - phase: 0 /TE/partial
         (968 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       206   4e-53

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 2/262 (0%)

Query: 263  NASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVLDALQKNELYINLK 322
            N  + FM LM +V   +L +++++  DDILI+SR  EEH Q+L   L  L++++LY  L 
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 323  KCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFHGLATFYMWFIKNF 382
            K  F    + FLG++VS  GI VD  K+EA++ W  P NV EV SF GLA +Y  F+++F
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 383  SSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDFDKLFEVDCDACRI 442
            S I AP+T   +K    +F W E    +F+E+K KLT+AP+L  P   +LF + CDA  +
Sbjct: 1092 SRIAAPMTRLTRKGV--KFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTV 1149

Query: 443  GIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHYLLGREFIIYTDHQ 502
            G+G VL Q  K +A+ S +L +  + +  +  EL AV    KTW HYL G +F +Y+DH+
Sbjct: 1150 GLGCVLMQQGKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSDHK 1209

Query: 503  ALTHFQTQKKVSKMHAHWQRIL 524
            +L +  TQK ++     W   L
Sbjct: 1210 SLKYIFTQKDLNSRQRRWMETL 1231