Jatropha Genome Database

JcCA0262721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262721.10 + phase: 2 /partial
         (539 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029971001 assembled CDS                                       971   0.0  
GSVIVT01037511001 assembled CDS                                       942   0.0  
GSVIVT01026229001 assembled CDS                                        84   3e-16
GSVIVT01024119001 assembled CDS                                        70   2e-12
GSVIVT01014767001 assembled CDS                                        62   5e-10

>GSVIVT01029971001 assembled CDS
          Length = 669

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/539 (86%), Positives = 490/539 (90%)

Query: 1   HFIVPELGPDVKFSYASHKAVTEYKEAKALGIDTVPVLVGPVSYLLLSKPAKGVEKTFSL 60
           H+IVPELGP+VKFSYASHKAV EY+EAKALG+DTVPV VGPVSYLLLSKPAKGVEK+FSL
Sbjct: 22  HYIVPELGPEVKFSYASHKAVKEYQEAKALGVDTVPVFVGPVSYLLLSKPAKGVEKSFSL 81

Query: 61  LSLLGKILPVYKEVISELKEAGASWIQFDEPTLVMDLDSHKLQAFTDAYSELESTLSGLN 120
           LSLL KILP+YKEV++ELK AGAS IQFDEPTLVMDLDSHKLQAFT AYSELE++ SGLN
Sbjct: 82  LSLLDKILPIYKEVVAELKAAGASSIQFDEPTLVMDLDSHKLQAFTHAYSELEASCSGLN 141

Query: 121 VVVETYFADVPAEAFKTLTSLKGVTGYGFDLVRGTKTLDLIKSDFPKGKYLFAGVVDGRN 180
           V+VETYFADVP+EAFKTLTSLKGVTG+GFDLVRGTKTLDLIK  FP GKYLFAGVVDGRN
Sbjct: 142 VIVETYFADVPSEAFKTLTSLKGVTGFGFDLVRGTKTLDLIKVGFPTGKYLFAGVVDGRN 201

Query: 181 IWANDLASSLSTLQELEGIVGKDKXXXXXXXXXXHTAVDLVNETKLDQEIKSWLAFAAQK 240
           IWANDLA+SLS LQELE IVGKDK          HTAVDL+NE KLDQEIKSWLAFAAQK
Sbjct: 202 IWANDLAASLSVLQELESIVGKDKLVVSTSCSLLHTAVDLINEPKLDQEIKSWLAFAAQK 261

Query: 241 VVEVNALAKALAGEKDEXXXXXXXXXXXXXXXXPRVTNEAVQKAAAALRGSDHRRATNVS 300
           +VEVNALAKALAG K+E                PRVTNEAVQKAA+AL+GSDHRRAT+VS
Sbjct: 262 IVEVNALAKALAGHKEEAFFSDNASAQASRKSSPRVTNEAVQKAASALKGSDHRRATDVS 321

Query: 301 ARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYTKAIKAEINKVVKL 360
           ARLDAQQ+KL LP+LPTTTIGSFPQT++LRRVRREYKAKKISEE+Y KAIK EINKVVKL
Sbjct: 322 ARLDAQQRKLKLPVLPTTTIGSFPQTMDLRRVRREYKAKKISEEDYVKAIKEEINKVVKL 381

Query: 361 QEELDIDVLVHGEPERNDMVEYFGEQLSGFVFTVNGWVQSYGSRCVKPPIIYGDVSRPNP 420
           QEELDIDVLVHGEPERNDMVEYFGEQLSGF FT NGWVQSYGSRCVKPPIIYGDVSRP P
Sbjct: 382 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKP 441

Query: 421 MTVFWSSTAQSMTARPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKA 480
           MTVFWS+ AQSMTARPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKA
Sbjct: 442 MTVFWSTMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKA 501

Query: 481 GINVIQIDEAALREGLPLRKSEQAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI 539
           GI VIQIDEAALREGLPLRKSE AFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI
Sbjct: 502 GITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI 560


>GSVIVT01037511001 assembled CDS
          Length = 804

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/539 (83%), Positives = 486/539 (90%)

Query: 1   HFIVPELGPDVKFSYASHKAVTEYKEAKALGIDTVPVLVGPVSYLLLSKPAKGVEKTFSL 60
           HFIVPELGP+VKFSYASHKAV E+KEAKALGI+TVPV+VGPVSYLLLSKPAKG+EK+FSL
Sbjct: 157 HFIVPELGPNVKFSYASHKAVNEFKEAKALGIETVPVIVGPVSYLLLSKPAKGLEKSFSL 216

Query: 61  LSLLGKILPVYKEVISELKEAGASWIQFDEPTLVMDLDSHKLQAFTDAYSELESTLSGLN 120
           LSL+ KILP+YKEV++ELK+AGA+WIQFDEPTLV+DLDSH LQAFT AYSELEST+SGLN
Sbjct: 217 LSLIDKILPIYKEVVTELKKAGATWIQFDEPTLVLDLDSHHLQAFTHAYSELESTVSGLN 276

Query: 121 VVVETYFADVPAEAFKTLTSLKGVTGYGFDLVRGTKTLDLIKSDFPKGKYLFAGVVDGRN 180
           V++ETYFADVPAEA+KTLTSLKGVTG+GFDLVRGTKTLDLI S FP GK LFAGVVDGRN
Sbjct: 277 VLIETYFADVPAEAYKTLTSLKGVTGFGFDLVRGTKTLDLIHSGFPSGKQLFAGVVDGRN 336

Query: 181 IWANDLASSLSTLQELEGIVGKDKXXXXXXXXXXHTAVDLVNETKLDQEIKSWLAFAAQK 240
           IWANDLA+SL+TL+ LE  VGK            HTAVDL NETKLD+EIKSWLAFAAQK
Sbjct: 337 IWANDLAASLNTLKSLEDKVGKGNLVVSTSCSLLHTAVDLANETKLDKEIKSWLAFAAQK 396

Query: 241 VVEVNALAKALAGEKDEXXXXXXXXXXXXXXXXPRVTNEAVQKAAAALRGSDHRRATNVS 300
           V EVNALAKAL+G++DE                PRVTNE VQKAAA+L+GSDHRRAT+VS
Sbjct: 397 VHEVNALAKALSGQRDEAFFFSNAAAHSSRKFSPRVTNENVQKAAASLKGSDHRRATDVS 456

Query: 301 ARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYTKAIKAEINKVVKL 360
           ARLDAQQKKL LP+LPTTTIGSFPQT++LRRVRRE+KAKKISE++Y KAIK EINKVV L
Sbjct: 457 ARLDAQQKKLGLPVLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKAIKDEINKVVVL 516

Query: 361 QEELDIDVLVHGEPERNDMVEYFGEQLSGFVFTVNGWVQSYGSRCVKPPIIYGDVSRPNP 420
           QEELDIDVLVHGEPERNDMVEYFGEQLSGF FTVNGWVQSYGSRCVKPPIIYGDVSRP  
Sbjct: 517 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKA 576

Query: 421 MTVFWSSTAQSMTARPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKA 480
           MTVFWSS AQSMT RPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLE+A
Sbjct: 577 MTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLERA 636

Query: 481 GINVIQIDEAALREGLPLRKSEQAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDI 539
           GI VIQIDEAALREGLPLRKSEQAFYL+WAVHSFRITNC VQDTTQIHTHMCYSNFNDI
Sbjct: 637 GITVIQIDEAALREGLPLRKSEQAFYLEWAVHSFRITNCSVQDTTQIHTHMCYSNFNDI 695


>GSVIVT01026229001 assembled CDS
          Length = 94

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 39/44 (88%)

Query: 476 DLEKAGINVIQIDEAALREGLPLRKSEQAFYLDWAVHSFRITNC 519
           +LEKA I VIQIDEAALRE LP RKSE AFYLDWAVHSFRITNC
Sbjct: 47  NLEKASITVIQIDEAALREVLPFRKSEHAFYLDWAVHSFRITNC 90


>GSVIVT01024119001 assembled CDS
          Length = 1550

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 35/49 (71%)

Query: 379 MVEYFGEQLSGFVFTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSS 427
           MVEYFG QLSGF  T+N  VQSYGSR  K PIIYG VSRP  + V W S
Sbjct: 1   MVEYFGHQLSGFDSTINERVQSYGSRYAKSPIIYGVVSRPKALIVLWFS 49


>GSVIVT01014767001 assembled CDS
          Length = 245

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 370 VHGEPERNDM------VEYFGEQLSGFVFTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTV 423
           V GE E+ DM      +  FGEQLSGF  T+N  VQSY S   K  IIYG VS+   + V
Sbjct: 30  VFGE-EKFDMGLEKQWLSIFGEQLSGFDSTINKQVQSYESLYAKSLIIYGVVSQSKALIV 88

Query: 424 FWSSTAQSMTARPMKGMLT 442
            W    QSM  R MKGMLT
Sbjct: 89  LWFLMVQSMAKRLMKGMLT 107