Jatropha Genome Database

JcCA0262331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262331.10 - phase: 0 
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019681001 assembled CDS                                        64   1e-11

>GSVIVT01019681001 assembled CDS
          Length = 81

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 1  MKGACTLXXXX-XXXXXXXXXXXXXGDRDVAFYPCSNEGSTPANGRH--RVPGGCASLDK 57
          MKG+C+L                  G RD AF PC  EG   + G++   +    +S DK
Sbjct: 1  MKGSCSLVASVFAASTVALTSSSSSGGRDGAFNPCCKEGLPLSLGKNNTEISHTSSSADK 60

Query: 58 EKFAPRFDGLRFIETLITAHR 78
          EKFAPRFDGLRFIETL+TAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81