Jatropha Genome Database

JcCA0262011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262011.10 + phase: 0 
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020650001 assembled CDS                                       272   6e-74
GSVIVT01023773001 assembled CDS                                       160   3e-40
GSVIVT01022584001 assembled CDS                                       115   7e-27
GSVIVT01018581001 assembled CDS                                       107   2e-24
GSVIVT01018579001 assembled CDS                                       107   2e-24
GSVIVT01016325001 assembled CDS                                       104   3e-23

>GSVIVT01020650001 assembled CDS
          Length = 558

 Score =  272 bits (696), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 150/173 (86%)

Query: 1   MNGPCPVIPSQLTSAILRSSQFQINAFCLRERDLLSRFAAEVSQHQANGESKERAFIMSY 60
           MN  CPV+PSQLTS+ LRSSQFQ + FCLRERDLL RFAAE+SQ QA G S+E A + SY
Sbjct: 375 MNKSCPVVPSQLTSSTLRSSQFQTDIFCLRERDLLIRFAAEMSQLQAQGLSREYALLQSY 434

Query: 61  QLAEDLGRAFSDRLILQTFIEAETTVSAGSLKNVLGLLRSMYALICLEEDSAFLRYGYLS 120
           QLAEDLGRAFSDR ILQTF++AE  VS+G LK++L LLRSM+ LI LEED++FLRYGYLS
Sbjct: 435 QLAEDLGRAFSDRAILQTFLDAEAAVSSGPLKSMLSLLRSMHVLIILEEDASFLRYGYLS 494

Query: 121 TESAAAVRKEVAKLCSELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSVK 173
            ++AA +RKEV  LCSELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSV+
Sbjct: 495 PDNAAGIRKEVTILCSELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSVQ 547


>GSVIVT01023773001 assembled CDS
          Length = 128

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 100/116 (86%)

Query: 58  MSYQLAEDLGRAFSDRLILQTFIEAETTVSAGSLKNVLGLLRSMYALICLEEDSAFLRYG 117
            SYQLAEDLGRAFSDR ILQTF++AE  VS+  LK++L LLRSM+ LI LEE ++FLRYG
Sbjct: 4   FSYQLAEDLGRAFSDRAILQTFLDAEVAVSSSLLKSMLSLLRSMHVLIILEECASFLRYG 63

Query: 118 YLSTESAAAVRKEVAKLCSELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSVK 173
           YLS ++A  +RKEV  LCSELRPHALALVSSFGIP+AF SPIAFNWI+ANSWSSV+
Sbjct: 64  YLSPDNAVGIRKEVTILCSELRPHALALVSSFGIPNAFFSPIAFNWINANSWSSVQ 119


>GSVIVT01022584001 assembled CDS
          Length = 84

 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 67/80 (83%)

Query: 59  SYQLAEDLGRAFSDRLILQTFIEAETTVSAGSLKNVLGLLRSMYALICLEEDSAFLRYGY 118
           +YQL EDLGRAFSDR IL TF++ E TVS+G LK++L LLRSM+ LI LEED++FLRYGY
Sbjct: 5   NYQLVEDLGRAFSDRAILHTFLDVEATVSSGPLKSMLSLLRSMHVLIILEEDASFLRYGY 64

Query: 119 LSTESAAAVRKEVAKLCSEL 138
           LS ++AA +RKEV  LCSEL
Sbjct: 65  LSPDNAAGIRKEVTILCSEL 84


>GSVIVT01018581001 assembled CDS
          Length = 70

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 58/70 (82%)

Query: 1  MNGPCPVIPSQLTSAILRSSQFQINAFCLRERDLLSRFAAEVSQHQANGESKERAFIMSY 60
          MN  CPV+PSQLTS+ LRSSQFQ N FCLRERDLL  FAAE+SQ QA+G S+E A + SY
Sbjct: 1  MNKSCPVVPSQLTSSTLRSSQFQTNIFCLRERDLLIHFAAEISQLQAHGLSREYALLQSY 60

Query: 61 QLAEDLGRAF 70
          QLAEDLGR+F
Sbjct: 61 QLAEDLGRSF 70


>GSVIVT01018579001 assembled CDS
          Length = 70

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 58/70 (82%)

Query: 1  MNGPCPVIPSQLTSAILRSSQFQINAFCLRERDLLSRFAAEVSQHQANGESKERAFIMSY 60
          MN  CPV+PSQLTS+ LRSSQFQ N FCLRERDLL  FAAE+SQ QA+G S+E A + SY
Sbjct: 1  MNKSCPVVPSQLTSSTLRSSQFQTNIFCLRERDLLIHFAAEISQLQAHGLSREYALLQSY 60

Query: 61 QLAEDLGRAF 70
          QLAEDLGR+F
Sbjct: 61 QLAEDLGRSF 70


>GSVIVT01016325001 assembled CDS
          Length = 70

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 58/70 (82%)

Query: 1  MNGPCPVIPSQLTSAILRSSQFQINAFCLRERDLLSRFAAEVSQHQANGESKERAFIMSY 60
          MN  CPV+PSQLTS+ LRSSQFQ + FCLRE+DLL  FAAE+SQ QA+G S+E A + SY
Sbjct: 1  MNKSCPVVPSQLTSSTLRSSQFQTDIFCLREQDLLIHFAAEISQLQAHGLSREYALLQSY 60

Query: 61 QLAEDLGRAF 70
          QLAEDLGR+F
Sbjct: 61 QLAEDLGRSF 70