Jatropha Genome Database

JcCA0261941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261941.10 + phase: 1 /partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003850001 assembled CDS                                       397   e-111
GSVIVT01031425001 assembled CDS                                       343   5e-95
GSVIVT01001667001 assembled CDS                                        98   5e-21
GSVIVT01010319001 assembled CDS                                        70   7e-13
GSVIVT01018572001 assembled CDS                                        64   7e-11

>GSVIVT01003850001 assembled CDS
          Length = 890

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/250 (79%), Positives = 219/250 (87%), Gaps = 1/250 (0%)

Query: 1   FNKIEQELERLSQKFGENVLDATKKFEKLITDEKEIEGLPXXXXXXXXXXXXXKGHKDAT 60
           FNKI+QELE+LSQKF ENVLDATK F KLITD+K+IEGLP             KGHKDAT
Sbjct: 160 FNKIQQELEKLSQKFEENVLDATKNFGKLITDKKDIEGLPATALGLAAQTAVSKGHKDAT 219

Query: 61  AENGPWVITLDGPSFMSVMQHARNRDLREEVYRAYVTRASSGDLDNTPIIDQIVKLRLEK 120
           AENGPW+ITLDGPSF+SVMQHA+NR LR+EVY AYVTRASSGDLDNT II QI+KLRLEK
Sbjct: 220 AENGPWIITLDGPSFLSVMQHAQNRSLRKEVYYAYVTRASSGDLDNTEIIGQILKLRLEK 279

Query: 121 AKLLNYNNYAEVSMATKMATVEKAEELLEKLRSASWDAAVRDMEDLKIFSKNQGAVEAND 180
           AKLL Y+NYAEVSMATKMATV+KAEELLEKLRSASWDAAV+D EDLK FSK+QGAVEA+D
Sbjct: 280 AKLLGYSNYAEVSMATKMATVDKAEELLEKLRSASWDAAVQDTEDLKNFSKSQGAVEADD 339

Query: 181 LSHWDISFWAERLRESRYDINEEELRPYFSLPKVMDGLFNLAKNLFGIDIEPADGLAPVI 240
           LSHWD++FW+ERLRES+YDINEEELRPYFSLPKVM GLF+LAK LFGIDIEPADGLAPV 
Sbjct: 340 LSHWDLNFWSERLRESKYDINEEELRPYFSLPKVMGGLFSLAKMLFGIDIEPADGLAPV- 398

Query: 241 YYTCIIFYLV 250
           +   + FY V
Sbjct: 399 WNNDVRFYCV 408


>GSVIVT01031425001 assembled CDS
          Length = 709

 Score =  343 bits (880), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 178/250 (71%), Positives = 209/250 (83%), Gaps = 1/250 (0%)

Query: 1   FNKIEQELERLSQKFGENVLDATKKFEKLITDEKEIEGLPXXXXXXXXXXXXXKGHKDAT 60
           FN+I+QELE+LSQKF EN+LD+TK+FEKLITD+K+IEGLP             KGHKDAT
Sbjct: 154 FNEIQQELEKLSQKFEENILDSTKQFEKLITDKKDIEGLPATALAMAAEMALSKGHKDAT 213

Query: 61  AENGPWVITLDGPSFMSVMQHARNRDLREEVYRAYVTRASSGDLDNTPIIDQIVKLRLEK 120
           AENGPWV+TLD PS+ SVMQHARNR LREEVYR+YV RASSGD +NTPII +I+KL+LEK
Sbjct: 214 AENGPWVLTLDAPSYRSVMQHARNRSLREEVYRSYVARASSGDHNNTPIIARILKLKLEK 273

Query: 121 AKLLNYNNYAEVSMATKMATVEKAEELLEKLRSASWDAAVRDMEDLKIFSKNQGAVEAND 180
           AKLL YNNYAEVSM  KMAT+ KAEEL+E LRSASW+AA++DMEDL+  +K Q A+EAND
Sbjct: 274 AKLLGYNNYAEVSMEMKMATINKAEELIEDLRSASWNAAIQDMEDLENLAKAQDAIEAND 333

Query: 181 LSHWDISFWAERLRESRYDINEEELRPYFSLPKVMDGLFNLAKNLFGIDIEPADGLAPVI 240
           L  WDI+FW ERLRE +YDINEEELRP+FSLPKV++GLFNLAK LF ID+EPADGLAPV 
Sbjct: 334 LKQWDINFWGERLRELKYDINEEELRPFFSLPKVINGLFNLAKMLFEIDVEPADGLAPV- 392

Query: 241 YYTCIIFYLV 250
           +   + FY V
Sbjct: 393 WNNDVKFYCV 402


>GSVIVT01001667001 assembled CDS
          Length = 151

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 57/81 (70%)

Query: 1   FNKIEQELERLSQKFGENVLDATKKFEKLITDEKEIEGLPXXXXXXXXXXXXXKGHKDAT 60
           FNK EQELE+LS+KF ENV+DAT KFEKLIT++K+IEGL              KGH++A 
Sbjct: 38  FNKSEQELEKLSKKFAENVMDATTKFEKLITNKKDIEGLSTTTLGLVPQKAASKGHENAI 97

Query: 61  AENGPWVITLDGPSFMSVMQH 81
            ENGP ++TLD   F+SVMQ 
Sbjct: 98  VENGPRILTLDDSCFLSVMQQ 118


>GSVIVT01010319001 assembled CDS
          Length = 686

 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 95/173 (54%), Gaps = 8/173 (4%)

Query: 61  AENGPWVITLDGPSFMSVMQHARNRDLREEVYRAYVTRASSGDLDNTPIIDQIVKLRLEK 120
           AENG + + L     + V++  +    R+ V  AY  R   G   N  ++  +++LR + 
Sbjct: 221 AENGKFKVYLRSRHVIPVLELCKIGMTRKTVAVAYGKR---GGEANPSVLKSLIQLRHKL 277

Query: 121 AKLLNYNNYAEVSMATKMA-TVEKAEELLEKLRSASWDAAVRDMEDLK-IFSKNQGAVEA 178
           A+LL+Y+NYA+ ++A +MA +  K  E LE + ++  + A R+++ LK +  K +G    
Sbjct: 278 ARLLSYSNYADYAVAPRMAKSSSKVFEFLEDISASVNELAARELDMLKDLKRKEEGEFP- 336

Query: 179 NDLSHWDISFWAERLRESRYDINEEELRPYFSLPKVMDGLFNLAKNLFGIDIE 231
               + D+ ++ +R+ E   D++   L+ YF +  V+ G+F + ++LFG+  E
Sbjct: 337 --FGNEDLLYYMKRVEEQYLDLDFGVLKQYFPINLVLPGIFKIFQDLFGLRFE 387


>GSVIVT01018572001 assembled CDS
          Length = 551

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 11/190 (5%)

Query: 55  GHKDATAENGPWVITLDGPSFMSVMQHARNRDLREEVYRAYVTRASSGDLDNTPIIDQIV 114
           G +D   E G + IT +  +  S++Q A + ++R+  Y     + +S    N  ++D+++
Sbjct: 302 GSRDNIKEKG-FRITTEPGTLSSILQWASDAEVRKMAY----IQGNSVPHANLAVLDKLI 356

Query: 115 KLRLEKAKLLNYNNYAEVSMATKMATV-EKAEELLEKLRSASWDAAVRDMEDLKIFSKNQ 173
             R E A+++ Y +YAE ++   MA+  E     L ++       A  + + ++ F K +
Sbjct: 357 AARHEIAQIMGYKSYAEFAVRPNMASSPEVVMSFLFEMSKMIRPKADEEFKAIRDFKKAR 416

Query: 174 GAVEANDLSHWDISFWAERLRESRYDINEEELRPYFSLPKVMDGLFNLAKNLFG-----I 228
                 DL  WD +++   ++ S Y+++   +  YF L + ++GL  L ++LFG     I
Sbjct: 417 TGQICEDLEPWDEAYFTGMMKSSAYNLDSSVVASYFPLHQCIEGLKVLVESLFGATFRSI 476

Query: 229 DIEPADGLAP 238
            + P +   P
Sbjct: 477 PLAPGESWHP 486