Jatropha Genome Database

JcCA0261901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261901.10 - phase: 2 /pseudo/partial
         (361 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018625001 assembled CDS                                       504   e-143
GSVIVT01001272001 assembled CDS                                       454   e-128
GSVIVT01016869001 assembled CDS                                       358   2e-99
GSVIVT01033873001 assembled CDS                                       279   2e-75
GSVIVT01035390001 assembled CDS                                       263   1e-70
GSVIVT01035389001 assembled CDS                                       259   2e-69
GSVIVT01006154001 assembled CDS                                       240   9e-64
GSVIVT01024570001 assembled CDS                                       145   3e-35

>GSVIVT01018625001 assembled CDS
          Length = 542

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 232/343 (67%), Positives = 285/343 (83%)

Query: 7   GPLFYKGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGS 66
           GPLF+ GWYH FYQYNPD+AVWGNI WGHAVS+D+IHWL+LPLAMV D+W+D+NGVWTGS
Sbjct: 28  GPLFHMGWYHLFYQYNPDSAVWGNITWGHAVSRDMIHWLYLPLAMVPDRWFDLNGVWTGS 87

Query: 67  ATILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPPGIGIKDF 126
           ATILP+G+I+MLYTG TN+SVQVQNLAYPA+ +DPLL+ W+KY +NPV+VPP GIG  DF
Sbjct: 88  ATILPNGQIIMLYTGDTNDSVQVQNLAYPANLSDPLLLHWIKYENNPVMVPPAGIGSDDF 147

Query: 127 RDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVDF 186
           RDPTT W  ++G WR+ +GS V  TGI L++ T +F ++EL +  LHGVPGTGMWECVDF
Sbjct: 148 RDPTTMWVGADGNWRVAVGSLVNTTGIVLVFQTTNFTDFELLDGELHGVPGTGMWECVDF 207

Query: 187 YPVSIYDRNGLETSANGPEVKHVVKASLDDDRHDYYALGTYDDKNATWYPDIPEIDVGIG 246
           YPVSI    GL+TSA+GP +KHV+KAS+DD+RHDYYALG YD    TW PD PE+DVGIG
Sbjct: 208 YPVSINGVYGLDTSAHGPGIKHVLKASMDDNRHDYYALGEYDPMTDTWTPDDPELDVGIG 267

Query: 247 LRYDYGIFYASKTFYDQHRGRRVLWGWIGESDSEAADVKKGWASLQGIPRTVAFDTKSGS 306
           LR DYG +YASKTFYDQ + RR+L+GWI E D E+ D+KKGWASLQ IPRTV  D K+G+
Sbjct: 268 LRLDYGKYYASKTFYDQVKKRRILYGWISEGDIESDDLKKGWASLQSIPRTVLHDNKTGT 327

Query: 307 NLLQWPVEEVENLRLRSKEFKNVEVKPGSVVPLDLEAATQENI 349
            LL WP+EEVE+LR  S EF++V ++PGSVVPLD+ +A+Q +I
Sbjct: 328 YLLLWPIEEVESLRTNSTEFEDVLLEPGSVVPLDIGSASQLDI 370


>GSVIVT01001272001 assembled CDS
          Length = 471

 Score =  454 bits (1167), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/299 (70%), Positives = 253/299 (84%)

Query: 51  MVADQWYDINGVWTGSATILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYS 110
           MVADQWYD NGVWTGSAT+L DG+++MLYTG+TNESVQVQNLAYPAD +DPLL++WVKY 
Sbjct: 1   MVADQWYDTNGVWTGSATLLSDGQVIMLYTGATNESVQVQNLAYPADLSDPLLVDWVKYP 60

Query: 111 SNPVLVPPPGIGIKDFRDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQ 170
            NPVLVPPPGI  +DFRDPTTAWY  +GKWRI IGSKV KTGI+L+Y+T DF  YEL   
Sbjct: 61  GNPVLVPPPGIDDRDFRDPTTAWYWPDGKWRIAIGSKVNKTGISLVYNTEDFKKYELIEG 120

Query: 171 VLHGVPGTGMWECVDFYPVSIYDRNGLETSANGPEVKHVVKASLDDDRHDYYALGTYDDK 230
           VLH VPGTGMWECVD YPVS+ + NGL+TS NGP VKHV+KASLDDD++DYYA+GTY  +
Sbjct: 121 VLHAVPGTGMWECVDLYPVSLKEDNGLDTSFNGPGVKHVLKASLDDDKNDYYAIGTYSLE 180

Query: 231 NATWYPDIPEIDVGIGLRYDYGIFYASKTFYDQHRGRRVLWGWIGESDSEAADVKKGWAS 290
           +  W PD   +DVGIGLRYDYG FYASKTFYDQ++ RR+LWGWIGE+D E+AD+KKGWAS
Sbjct: 181 SGNWTPDNSNLDVGIGLRYDYGKFYASKTFYDQNKQRRILWGWIGETDGESADIKKGWAS 240

Query: 291 LQGIPRTVAFDTKSGSNLLQWPVEEVENLRLRSKEFKNVEVKPGSVVPLDLEAATQENI 349
           +Q IPRTV FD K+G+N+LQWPV E+++LR  SK+F  +EV PGSVV L++E ATQ +I
Sbjct: 241 VQSIPRTVVFDKKTGTNILQWPVAEIKSLRKSSKKFDKLEVGPGSVVTLEVEKATQMDI 299


>GSVIVT01016869001 assembled CDS
          Length = 574

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 170/345 (49%), Positives = 230/345 (66%), Gaps = 3/345 (0%)

Query: 8   PLFYKGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGSA 67
           P+ YKG YHFFYQYNP  AVWGNIVW H+ S DL++W     A+   Q  DING W+GSA
Sbjct: 66  PMIYKGLYHFFYQYNPHGAVWGNIVWAHSTSTDLVNWTPHKYAISPSQPADINGCWSGSA 125

Query: 68  TILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPP--GIGIKD 125
           TILP+GK V+LYTG   ++ QVQN+A P + +DP L+EW K   NP++ P     I    
Sbjct: 126 TILPNGKPVILYTGIDPQNKQVQNMAVPKNLSDPFLLEWTKLPQNPLMEPTTINSINASS 185

Query: 126 FRDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVD 185
           FRDPTTAW  ++G+WR+ IGSK+ + G+A++Y + DF+ +      LH    TGMWEC D
Sbjct: 186 FRDPTTAWQGTDGRWRVIIGSKIKRKGLAILYRSKDFVRWTKAQHPLHSGKNTGMWECPD 245

Query: 186 FYPVSIYDRNGLETSANGPEVKHVVKASLDDDRHDYYALGTYDDKNATWYPDIPEIDVGI 245
           F+PVSI    G++TS+    +K+V+K SLDD +HDYY +G+Y+ +  T+ PD   +D   
Sbjct: 246 FFPVSINSSTGVDTSSISKTLKYVLKLSLDDTKHDYYTIGSYNREKDTYVPDKGSVDNDS 305

Query: 246 GLRYDYGIFYASKTFYDQHRGRRVLWGWIGESDSEAADVKKGWASLQGIPRTVAFDTKSG 305
           GLRYDYG FYASKTF+D  + RR+LWGWI ES S   D++KGW+ +Q IPR V  D KSG
Sbjct: 306 GLRYDYGKFYASKTFFDNAKNRRILWGWINESSSVEHDIEKGWSGVQAIPRNVWLD-KSG 364

Query: 306 SNLLQWPVEEVENLRLRSKEFKNVEVKPGSVVPLDLEAATQENID 350
             LLQWP+ E+E  R++     + E+K GS V +    A+Q +++
Sbjct: 365 KQLLQWPIAEIEKQRIKPGHMSSRELKGGSKVEVGGITASQADVE 409


>GSVIVT01033873001 assembled CDS
          Length = 529

 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/344 (44%), Positives = 199/344 (57%), Gaps = 45/344 (13%)

Query: 7   GPLFYKGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGS 66
           GP++Y G YH FYQYNP  AVWGNIVW H+VS++LI W  L  A+   + +DING W+GS
Sbjct: 66  GPMYYNGIYHLFYQYNPKGAVWGNIVWAHSVSRNLIDWEALEPAIYPSKPFDINGCWSGS 125

Query: 67  ATILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPPGIGIKDF 126
           ATILP  K  +LYTG   +  QVQN+A+PA+ +DP L +WVK  SNP++VP  G+    F
Sbjct: 126 ATILPGNKPAILYTGIDTQQRQVQNIAFPANLSDPYLRKWVKPDSNPLVVPDVGMNASTF 185

Query: 127 RDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVDF 186
           RDPTTAW  + G WR+ +G++    GI                        TGMWEC DF
Sbjct: 186 RDPTTAWRVN-GHWRMLVGARKKHRGI-----------------------NTGMWECPDF 221

Query: 187 YPVSIYDRNGLETSANGPEVKHVVKASLDDDRHDYYALGTYDDKNATWYPDIPEIDVGIG 246
           +PVS+Y   GL+TS  G  V+HV+K SLD  R++YY +G Y           PEID    
Sbjct: 222 FPVSLYSERGLDTSVTGKNVRHVLKVSLDRTRYEYYTIGRY----------YPEID---- 267

Query: 247 LRYDYGIFYASKTFYDQHRGRRVLWGWIGESDSEAADVKKGWASLQGIPRTVAFDTKSGS 306
            RY  G      T  D   G R+LWGW  ESD+   D  KGWA +Q IPRT+  D K   
Sbjct: 268 -RYIPG-----NTSADGWSGLRILWGWANESDTADNDTAKGWAGIQTIPRTLWLD-KGKK 320

Query: 307 NLLQWPVEEVENLRLRSKEFKNVEVKPGSVVPLDLEAATQENID 350
            LLQWP+EE+  LR +  + +N E+K G  V +    A Q +++
Sbjct: 321 QLLQWPIEELNTLRGQKIQVRNQELKIGENVEITGITAAQADVE 364


>GSVIVT01035390001 assembled CDS
          Length = 508

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/344 (41%), Positives = 192/344 (55%), Gaps = 68/344 (19%)

Query: 7   GPLFYKGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGS 66
           GP++Y G YH FYQYNP AAVWGNI W H++S DL++W+HL  A+     +DING WTGS
Sbjct: 56  GPMYYNGVYHLFYQYNPYAAVWGNITWAHSISYDLVNWVHLDHALNPTDPFDINGCWTGS 115

Query: 67  ATILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPPGIGIKDF 126
           ATILP  + V++YTG+  ++ QVQN+A P + +DPLL EW+K   NP++ P  GI   +F
Sbjct: 116 ATILPGEEPVIIYTGADTQNRQVQNMAVPKNISDPLLREWIKSPRNPLMSPTNGIDANNF 175

Query: 127 RDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVDF 186
           RDPTTAW   +  WRI                        +    LH    TGMWEC DF
Sbjct: 176 RDPTTAWQGPDKVWRI------------------------ISQTPLHSSNKTGMWECPDF 211

Query: 187 YPVSIYDRNGLETSANGPEVKHVVKASLDDDRHDYYALGTYDDKNATWYPDIPEIDVGIG 246
           YPVS   R G+ETS    + +HV+KAS + +  DYY +G Y                   
Sbjct: 212 YPVST--RTGVETSVQNADTQHVLKASFNGN--DYYIIGKY------------------- 248

Query: 247 LRYDYGIFYASKTFYDQHRGRRVLWGWIGESDSEAADVKKGWASLQGIPRTVAFDTKSGS 306
                               RR+LW WI ESDS +AD++KGW+ LQ IPR+V  D ++G 
Sbjct: 249 --------------------RRILWAWIQESDSSSADIEKGWSGLQSIPRSVLLD-QTGR 287

Query: 307 NLLQWPVEEVENLRLRSKEFKNVEVKPGSVVPLDLEAATQENID 350
            L+QWP++E+E LR       N EV+ GSV+ +    A+Q +++
Sbjct: 288 QLVQWPIKEIEELRENQVTLLNKEVRGGSVLEVPGITASQVDVE 331


>GSVIVT01035389001 assembled CDS
          Length = 539

 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/344 (40%), Positives = 188/344 (54%), Gaps = 69/344 (20%)

Query: 7   GPLFYKGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGS 66
           GP++Y G YH FYQYNP AAVWGNI W H+ S DL++W+HL LA+     +DING W+GS
Sbjct: 96  GPMYYNGVYHLFYQYNPYAAVWGNITWAHSTSYDLVNWVHLELAIKPTDPFDINGCWSGS 155

Query: 67  ATILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPPGIGIKDF 126
           ATIL   + V++YTG  +++ QVQNL+ P + +DPLL EW+K   NP++ P  GI   +F
Sbjct: 156 ATILTGEEPVIIYTGKDSQNRQVQNLSVPKNISDPLLREWIKSPHNPLMTPIDGIDASNF 215

Query: 127 RDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVDF 186
           RDPTTAW  S+  WRI                        L    LH    TGMWEC DF
Sbjct: 216 RDPTTAWQGSDKVWRI------------------------LSQTPLHSSNKTGMWECPDF 251

Query: 187 YPVSIYDRNGLETSANGPEVKHVVKASLDDDRHDYYALGTYDDKNATWYPDIPEIDVGIG 246
           YPVSI  RNG+ETS    E +HV+KAS + +  DYY +G Y                   
Sbjct: 252 YPVSISSRNGVETSVQNAETRHVLKASFNGN--DYYIMGKY------------------- 290

Query: 247 LRYDYGIFYASKTFYDQHRGRRVLWGWIGESDSEAADVKKGWASLQGIPRTVAFDTKSGS 306
                               RR+LW WI E+D    D +KGW+ LQ  PR+V  D ++G 
Sbjct: 291 --------------------RRILWAWIQEADK---DTEKGWSGLQSFPRSVLLD-QNGQ 326

Query: 307 NLLQWPVEEVENLRLRSKEFKNVEVKPGSVVPLDLEAATQENID 350
            L+QWPV+E+  L      F N E++ GSV+ +    A+Q +++
Sbjct: 327 RLVQWPVKEIAILHKNQVTFHNKELRGGSVIEVSGITASQADVE 370


>GSVIVT01006154001 assembled CDS
          Length = 170

 Score =  240 bits (612), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 133/185 (71%), Gaps = 37/185 (20%)

Query: 7   GPLFYKGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGS 66
           GP+FY GWYHFFYQYNPDAAVWGNIVWGHAVSKDLI WLHLPLAMVADQWYD NGVWTGS
Sbjct: 23  GPMFYGGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIEWLHLPLAMVADQWYDTNGVWTGS 82

Query: 67  ATILPDGKIVMLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPPGIGIKDF 126
           AT+L DG+++MLYTG+TNESVQVQNLAYPAD +DPLL++WVKY  N              
Sbjct: 83  ATLLSDGQVIMLYTGATNESVQVQNLAYPADLSDPLLVDWVKYPVN-------------- 128

Query: 127 RDPTTAWYTSEGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVDF 186
                                  KTGI+L+Y+T DF  YEL   VLH VPGTGMWECVD 
Sbjct: 129 -----------------------KTGISLVYNTEDFKKYELIEGVLHAVPGTGMWECVDL 165

Query: 187 YPVSI 191
           YPVS+
Sbjct: 166 YPVSL 170


>GSVIVT01024570001 assembled CDS
          Length = 191

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 98/174 (56%)

Query: 17  FFYQYNPDAAVWGNIVWGHAVSKDLIHWLHLPLAMVADQWYDINGVWTGSATILPDGKIV 76
             Y YN   AVWGNI W H++S  L+ W++L  A+      DING WTGSATILP  + V
Sbjct: 1   MLYHYNFYVAVWGNITWAHSISYVLVKWVNLGHALNPTDPCDINGCWTGSATILPGEEPV 60

Query: 77  MLYTGSTNESVQVQNLAYPADHNDPLLIEWVKYSSNPVLVPPPGIGIKDFRDPTTAWYTS 136
           ++Y G   E  Q QN A   + +DPL  EW+K   NP++ P  GI   +F++P TAW   
Sbjct: 61  IIYIGVDTEIRQFQNRALAKNISDPLHREWMKSPHNPIMTPIDGIDASNFKNPITAWQAL 120

Query: 137 EGKWRITIGSKVGKTGIALIYDTVDFINYELRNQVLHGVPGTGMWECVDFYPVS 190
              WRI  GS     G  L + + DF+N+     +LH    TGMWEC +FY +S
Sbjct: 121 LKVWRILDGSLRNGHGTTLFFRSKDFVNWNKSQTLLHSSNKTGMWECANFYSLS 174