Jatropha Genome Database

JcCA0261271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261271.10 + phase: 0 
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019609001 assembled CDS                                        78   1e-15

>GSVIVT01019609001 assembled CDS
          Length = 716

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVASSV+HEVLG R  DVDQPI+DYI+NV                           CV
Sbjct: 1   MTEVASSVIHEVLGRRALDVDQPIIDYIVNVLADDDFDFGFQGEGAVDAIGELLVDSGCV 60

Query: 61  SDFEECR----------------LQKPTVRSLTAPIRMNDGMD 87
           SD  ECR                  KP VRSL AP+RM DGMD
Sbjct: 61  SDDAECRSVCSILCEKFGKHGLVKPKPAVRSLAAPLRMFDGMD 103