Jatropha Genome Database
- JcCA0261101.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0261101.10 - phase: 0 /partial
(475 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01017662001 assembled CDS 629 0.0
GSVIVT01017603001 assembled CDS 626 e-180
GSVIVT01009194001 assembled CDS 71 1e-12
GSVIVT01027547001 assembled CDS 66 3e-11
GSVIVT01003123001 assembled CDS 66 4e-11
>GSVIVT01017662001 assembled CDS
Length = 1520
Score = 629 bits (1622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 365/474 (77%), Gaps = 37/474 (7%)
Query: 1 MANLAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVMLPS 60
MA+LAVPSWA SPEEFIK+HRDALES++VSCQIHHWIDITFGYKMSGQAA+AA NVMLPS
Sbjct: 399 MADLAVPSWARSPEEFIKVHRDALESDQVSCQIHHWIDITFGYKMSGQAALAAMNVMLPS 458
Query: 61 SEPTMPRPVGRRQLFTRPHPVRLGSLRKKHSATNTSAANRCLSSTVESETPLLSETAYLQ 120
+EP MP S + E PLL +T YLQ
Sbjct: 459 TEPMMP-------------------------------------SELVGEKPLLPQTVYLQ 481
Query: 121 ALEETSGFSEHAGHLSPQYYYDAENLVKDMFSGDESVNESIEKSVSKPLEIGKNYGLQCN 180
LEE + FSEHA HLSP Y Y +NL D+ S +E +ES +K +SK E+G G+
Sbjct: 482 DLEEAAAFSEHAWHLSPLYCYHPKNLADDVSSVEEPPSESSKKGISKTPELGNKNGVPSE 541
Query: 181 INLSYLLEHMEVEVENTMGYQELQHWRRQPSYSKNSKEDFSKDIFAIGSVLAELYLKRPL 240
I+L+YLL+++EV+ E ++GYQEL WR++ S+ ED +KDIF++G +LAEL+L+RPL
Sbjct: 542 IDLNYLLDYIEVDDEGSVGYQELLLWRQKSYCSRALSEDVAKDIFSVGCILAELHLRRPL 601
Query: 241 FNSTSLATYIERDILPEFFQELPPHAKVLVEACIQKDWRRRPSAKSLLESPYFPTTVKSS 300
F+STSLA Y+E ILP QELPPH K LVEACI KDWRRRPSAKSLLESPYF TTV+SS
Sbjct: 602 FDSTSLAMYLENGILPGLIQELPPHTKALVEACILKDWRRRPSAKSLLESPYFLTTVRSS 661
Query: 301 YMFIAPLQLIASNGSRLQYAANFAKQGALKAMGSFAAEMCLPYCIPLVVNPQSDTEAEWA 360
Y+F+APLQL+A +GSRL+YAANFAKQGALKAMG+F AEMC PYC+PLVV P SDTEAEWA
Sbjct: 662 YLFVAPLQLLAKDGSRLRYAANFAKQGALKAMGAFGAEMCAPYCLPLVVAPLSDTEAEWA 721
Query: 361 YTLLKEFIKCLTPKAVKMAVLPAIQKILQARYSHLKVSLLQGSFVQEMWNLIGKQVYLEN 420
Y LLKEF+KCL KAVK VLPAIQKILQA YSHLKVSLLQ SFV+E+WN +GKQ YLE
Sbjct: 722 YILLKEFLKCLKSKAVKSLVLPAIQKILQASYSHLKVSLLQDSFVREVWNRVGKQTYLEM 781
Query: 421 IHPLVISNLHVAPHKSSAAVASVLLIGTSEELGVPITVHQTILPLIHCFGKGLC 474
+HPLVISNL VAPHKSSA+ ASVLLIG+SEELGVPITVHQTILPLIHCFGKGLC
Sbjct: 782 VHPLVISNLFVAPHKSSASAASVLLIGSSEELGVPITVHQTILPLIHCFGKGLC 835
>GSVIVT01017603001 assembled CDS
Length = 1609
Score = 626 bits (1615), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/474 (66%), Positives = 362/474 (76%), Gaps = 37/474 (7%)
Query: 1 MANLAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVMLPS 60
MA+LAVPSWA SPEEFIK+HRDALES+RVSCQIHHWIDITFGYKMSGQAA+AAKNVMLPS
Sbjct: 488 MADLAVPSWARSPEEFIKVHRDALESDRVSCQIHHWIDITFGYKMSGQAALAAKNVMLPS 547
Query: 61 SEPTMPRPVGRRQLFTRPHPVRLGSLRKKHSATNTSAANRCLSSTVESETPLLSETAYLQ 120
+EP MP S + E PLL +T YLQ
Sbjct: 548 TEPMMP-------------------------------------SELVGEKPLLPQTVYLQ 570
Query: 121 ALEETSGFSEHAGHLSPQYYYDAENLVKDMFSGDESVNESIEKSVSKPLEIGKNYGLQCN 180
LEE + FSEHA HLSP Y Y +NL D+ S +E +ES +K +SK E+G G+
Sbjct: 571 DLEEAAAFSEHAWHLSPLYCYHPKNLADDVSSVEEPPSESSKKGISKTPELGNKNGVPSE 630
Query: 181 INLSYLLEHMEVEVENTMGYQELQHWRRQPSYSKNSKEDFSKDIFAIGSVLAELYLKRPL 240
I+L+YLL+++EV+ E ++GYQEL WR++ SK ED +KDIF++G +LAEL+L+RPL
Sbjct: 631 IDLNYLLDYIEVDDEGSVGYQELLLWRQKSYCSKALSEDVAKDIFSVGCILAELHLRRPL 690
Query: 241 FNSTSLATYIERDILPEFFQELPPHAKVLVEACIQKDWRRRPSAKSLLESPYFPTTVKSS 300
F+STSLA Y+E ILP QELPPH K LVEACI KDWRRRPSAKSL ESPYF TTV+SS
Sbjct: 691 FDSTSLAMYLENGILPGLIQELPPHTKALVEACILKDWRRRPSAKSLFESPYFLTTVRSS 750
Query: 301 YMFIAPLQLIASNGSRLQYAANFAKQGALKAMGSFAAEMCLPYCIPLVVNPQSDTEAEWA 360
Y+F+APLQL+A +GS L+YAANFAKQGALKAM +F AEMC PYC+PLVV P SDTEAEWA
Sbjct: 751 YLFVAPLQLLAKDGSHLRYAANFAKQGALKAMRAFGAEMCAPYCLPLVVAPLSDTEAEWA 810
Query: 361 YTLLKEFIKCLTPKAVKMAVLPAIQKILQARYSHLKVSLLQGSFVQEMWNLIGKQVYLEN 420
Y LLKEF+KCL KAVK VLPAIQKILQA YSHLKVSLLQ SFV+E+WN +GKQ YLE
Sbjct: 811 YILLKEFLKCLKSKAVKSLVLPAIQKILQASYSHLKVSLLQDSFVREVWNRVGKQTYLEM 870
Query: 421 IHPLVISNLHVAPHKSSAAVASVLLIGTSEELGVPITVHQTILPLIHCFGKGLC 474
+HPLVISNL VAPHKSSA+ ASVLLIG SEELGVPITVHQT+LPLIHCFGKGLC
Sbjct: 871 VHPLVISNLFVAPHKSSASAASVLLIGFSEELGVPITVHQTVLPLIHCFGKGLC 924
>GSVIVT01009194001 assembled CDS
Length = 3077
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVM 57
+ ++ +P WA SPEEFI +R+ALESE VS +HHWID+ FGYK G+ AV A N+
Sbjct: 2796 IGDICLPPWAKGSPEEFINRNREALESEYVSSNLHHWIDLVFGYKQRGKPAVEAANIF 2853
>GSVIVT01027547001 assembled CDS
Length = 2455
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 1 MANLAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVML 58
+ ++ +P WA +P +FI HR ALESE VS +H WID+ FGYK G+ A+ A NV
Sbjct: 1941 LDSVKLPPWAENPVDFIHKHRMALESEHVSAHLHEWIDLIFGYKQRGKEAILANNVFF 1998
>GSVIVT01003123001 assembled CDS
Length = 3220
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 21/103 (20%)
Query: 1 MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVML- 58
+ ++ +P WA S EFI+ HR+ALES+ VS +HHWID+ FGYK G+AA A NV
Sbjct: 2846 VGDVVLPPWAKGSTREFIRKHREALESDFVSENLHHWIDLIFGYKQRGKAAEEAVNVFYH 2905
Query: 59 ----------PSSEPTMPRPV-------GR--RQLFTRPHPVR 82
++P++ + G+ +QLF +PH R
Sbjct: 2906 YTYEGSVDIDSVTDPSLKASILAQINHFGQTPKQLFLKPHVKR 2948