Jatropha Genome Database

JcCA0261081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261081.10 - phase: 0 /pseudo/partial
         (281 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031344001 assembled CDS                                       319   7e-88
GSVIVT01032508001 assembled CDS                                        72   2e-13
GSVIVT01021316001 assembled CDS                                        65   5e-11
GSVIVT01027599001 assembled CDS                                        60   1e-09
GSVIVT01008397001 assembled CDS                                        54   1e-07
GSVIVT01010540001 assembled CDS                                        47   9e-06

>GSVIVT01031344001 assembled CDS
          Length = 416

 Score =  319 bits (818), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 154/178 (86%), Positives = 163/178 (91%), Gaps = 1/178 (0%)

Query: 25  YSRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAE 84
           +SRRADATEDL +ALETG KE+IEK+SKRTVKVTKQHNEDCK+LLRLMGVPVIEAPSEAE
Sbjct: 102 FSRRADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAE 161

Query: 85  AQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNM 144
           AQCAALCKSGKVYAVASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEF+I KILEELNL M
Sbjct: 162 AQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTM 221

Query: 145 DQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRDSLFVAYSDTKYQ 202
           DQFIDLCILSGCDYCDSIRGIGG TALKLIRQHG IE ILENINR+   +   D  YQ
Sbjct: 222 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIP-DDWPYQ 278


>GSVIVT01032508001 assembled CDS
          Length = 1449

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 64  DCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSS 123
           +C+ LL++ G+P I AP EAEAQCA +  +  V  V ++D D   FGA    +++ D   
Sbjct: 801 ECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFD--E 858

Query: 124 RKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDYCDSIRGIGGLTALKLI 174
           RK  V  + +K I  EL LN ++ I + +L G DY + + GIG + A++++
Sbjct: 859 RKY-VETYFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVL 908


>GSVIVT01021316001 assembled CDS
          Length = 547

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 33  EDLAQALE---TGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAA 89
           E+LA+A+E    G      +  ++ V ++     +  ++L+   V  I AP EA+AQ   
Sbjct: 98  ENLARAIEHESNGNSAAAYECYQKAVDISPSIARELIQVLKQENVSYIVAPYEADAQMTF 157

Query: 90  LCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNMDQF-- 147
           L  S +V A+ +ED D + FG PR +   MD   + +   EF+   I +   L+   F  
Sbjct: 158 LAVSQQVDAIITEDSDMIPFGCPRIIFK-MDKFGQGV---EFKYSMIQQNKELSFAGFTK 213

Query: 148 ---IDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENI 187
              +++CILSGCDY  S+ G+G   A  LI++    + +++++
Sbjct: 214 QMILEMCILSGCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHL 256


>GSVIVT01027599001 assembled CDS
          Length = 667

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 63  EDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPS 122
           ++C  LL L+G+PV++A  EAEA CA L   G V A  + D D+  FGA   ++ L  P+
Sbjct: 121 QECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCLR-PN 179

Query: 123 SRKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDY-CDSIRGIGGLTALKLIR 175
            ++ P+  + +  I   L L     I + +L G DY  + ++GIG  TA++ ++
Sbjct: 180 CKE-PLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDTAVRFVQ 232


>GSVIVT01008397001 assembled CDS
          Length = 509

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 34  DLAQA-LETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCK 92
           DLA A L+ G      +  +R V +T        ++LR   +  + AP EA+AQ A L  
Sbjct: 82  DLAMAKLKEGDVTGASELFQRAVTITPSMAHQLIQILRTENIEFVVAPYEADAQLAYLSN 141

Query: 93  ----SGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEEL-------N 141
                G + AV +ED D + +G  R +   MD   R     E  + ++ + +       N
Sbjct: 142 LEADKGGIAAVITEDSDLMAYGC-RAIIFKMD---RYGNGEEMVLDRVFDSVARAPSFQN 197

Query: 142 LNMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETIL 184
            + + F  +C+L+GCD+  S+ GIG   A  ++ ++  ++ +L
Sbjct: 198 FDKELFTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVL 240


>GSVIVT01010540001 assembled CDS
          Length = 565

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 72  MGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF 131
           +G+P ++   EAEAQCA L          + D D   FGA    R +         V+ +
Sbjct: 132 LGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICLGEGGY--VVCY 189

Query: 132 EIKKILEELNLNMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRDS 191
           E+  I   L    +  I L +L G DY   + G G  +A ++++  G  E +L+ I  + 
Sbjct: 190 EMADIESTLGFGRNSLITLALLLGSDYSQGVHGFGPESACQIVKSVG-EEVVLKKIALEG 248

Query: 192 LFVAYSDTKYQMTGHI 207
           +  A      +  G +
Sbjct: 249 ISFAKKSKGSRKQGQV 264