Jatropha Genome Database

JcCA0260771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0260771.10 + phase: 0 /partial
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037722001 assembled CDS                                       489   e-139

>GSVIVT01037722001 assembled CDS
          Length = 536

 Score =  489 bits (1259), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/278 (82%), Positives = 264/278 (94%), Gaps = 1/278 (0%)

Query: 1   IGDVAVLDISATKVDEDNSSI-NIPDAESKGFHFDTEDGDKVLPGFLDSIIGMQRGETKS 59
           IGDV VLDISAT +D+D S++  IP AESKGFHFDTEDGDKVLPGFLDSIIG+++GETKS
Sbjct: 259 IGDVVVLDISATTIDQDESNVQKIPSAESKGFHFDTEDGDKVLPGFLDSIIGIRQGETKS 318

Query: 60  FPLVFPESWNQENLRGVQAQFTVECKELFYRDMPELDDSLADKLLPGCTTLQQVKESLLQ 119
           FPLVFPESW QENLRGV AQFTVECKELFYR++PEL+DSLA+KLLPGCTTL+QVKESLLQ
Sbjct: 319 FPLVFPESWRQENLRGVHAQFTVECKELFYRELPELNDSLAEKLLPGCTTLEQVKESLLQ 378

Query: 120 KCQEVERTARDQATDNAILDQLHKMVEIDIPRSLFEEQGRQFYGAKLLEVQAKMKLNEEQ 179
           +C EVE+TA++QATDNAILDQLHKM+E+DIP+SLFEEQGRQ YGA+LL++QA MKLNE+Q
Sbjct: 379 RCLEVEQTAKEQATDNAILDQLHKMIEVDIPQSLFEEQGRQLYGAQLLQIQANMKLNEQQ 438

Query: 180 LASLSSPKAVNEYLENQKQNITKVIKQNLAVGDIFKRENLEFSTDDLVKEVENSISEFKR 239
           LASLSSPKAVNEYLE+QK+NIT VIKQNLAVGDIF+RENL+F T++LVKEVENSISEFKR
Sbjct: 439 LASLSSPKAVNEYLESQKENITSVIKQNLAVGDIFRRENLQFPTEELVKEVENSISEFKR 498

Query: 240 HKQEYDEERVRDQVQEILEGAKVLEWLKEHAEIQYITK 277
           HKQEYDEER+R+QVQE+LEGAKVLEWLKEHAEI+Y T+
Sbjct: 499 HKQEYDEERIREQVQEVLEGAKVLEWLKEHAEIEYKTR 536