Jatropha Genome Database

JcCA0259921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0259921.10 - phase: 0 /partial
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021714001 assembled CDS                                       380   e-106
GSVIVT01021712001 assembled CDS                                       360   e-100

>GSVIVT01021714001 assembled CDS
          Length = 295

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/220 (80%), Positives = 196/220 (89%)

Query: 1   VGHLGEAYEEWVHQPIVSKEGPRFFESDFWEFLTRTVWWAIPVIWLPVVCWCISMSVRMG 60
           VGHLGE Y+EWVHQPIVSKEGPRFF+SDFWE LTRT WWAIP+IWLPVV W IS SVRMG
Sbjct: 76  VGHLGEDYQEWVHQPIVSKEGPRFFDSDFWEALTRTKWWAIPLIWLPVVTWSISRSVRMG 135

Query: 61  HKPSEIALMVASGILIWTLLEYSLHRFVFHIKTKTYWWNTLHYLIHGCHHKHPMDGLRLV 120
            +   + LM+A GI +WTL+EYSLHRF+FHIKTKTYW NT+HYL+HGCHHKHPMDGLRLV
Sbjct: 136 LELPRLVLMMAIGIFVWTLMEYSLHRFLFHIKTKTYWGNTIHYLLHGCHHKHPMDGLRLV 195

Query: 121 FPPAATAVLCVPFWNLVQLFATPSTAPALFGGGLLGYVMYDCTHYYLHHGQPSSGVPKDL 180
           FPPA  AV+CVP WNL++  +TP+TAPALFGGGLLGYVMYD THYYLHHGQPSS VP++L
Sbjct: 196 FPPAGAAVICVPLWNLIKFLSTPTTAPALFGGGLLGYVMYDVTHYYLHHGQPSSKVPRNL 255

Query: 181 KKYHLNHHFRIQNMGFGITSALWDRVFGTLPPSKVVEKSR 220
           KKYHLNHHFRIQ+MGFGITS+LWDRVFGTLPPSK   KSR
Sbjct: 256 KKYHLNHHFRIQDMGFGITSSLWDRVFGTLPPSKAPGKSR 295


>GSVIVT01021712001 assembled CDS
          Length = 237

 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 162/220 (73%), Positives = 189/220 (85%)

Query: 1   VGHLGEAYEEWVHQPIVSKEGPRFFESDFWEFLTRTVWWAIPVIWLPVVCWCISMSVRMG 60
           VGHLGEAYEEWVHQPI+SKEGPRFF SD  E  TRTVWW IP++WLPVVCW +SMSVRMG
Sbjct: 18  VGHLGEAYEEWVHQPIISKEGPRFFGSDILESTTRTVWWVIPLVWLPVVCWAVSMSVRMG 77

Query: 61  HKPSEIALMVASGILIWTLLEYSLHRFVFHIKTKTYWWNTLHYLIHGCHHKHPMDGLRLV 120
               ++A  VA G+ IWT LEY+LHRF+FHIKTK+YW NT+HYL+HGCHHKHPMDGLRLV
Sbjct: 78  LPLLQLAAAVAGGLFIWTFLEYTLHRFLFHIKTKSYWGNTIHYLLHGCHHKHPMDGLRLV 137

Query: 121 FPPAATAVLCVPFWNLVQLFATPSTAPALFGGGLLGYVMYDCTHYYLHHGQPSSGVPKDL 180
           FPPAA A+LC+PFWNL++L + PS AP LFGGGLLGYV+YD THYYLHHG+PS G+ +++
Sbjct: 138 FPPAAAAILCLPFWNLMKLLSPPSVAPTLFGGGLLGYVIYDVTHYYLHHGKPSKGITQNM 197

Query: 181 KKYHLNHHFRIQNMGFGITSALWDRVFGTLPPSKVVEKSR 220
           K+YH+NHHFRI + GFGITS  WDRVFGTLPP+K  EKSR
Sbjct: 198 KRYHMNHHFRIDDKGFGITSTFWDRVFGTLPPAKAAEKSR 237