Jatropha Genome Database

JcCA0259681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0259681.10 + phase: 0 /partial
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036686001 assembled CDS                                       166   2e-42
GSVIVT01010980001 assembled CDS                                        50   3e-07
GSVIVT01019119001 assembled CDS                                        49   5e-07
GSVIVT01007563001 assembled CDS                                        49   5e-07
GSVIVT01017774001 assembled CDS                                        49   5e-07
GSVIVT01019118001 assembled CDS                                        49   7e-07
GSVIVT01030514001 assembled CDS                                        48   1e-06

>GSVIVT01036686001 assembled CDS
          Length = 535

 Score =  166 bits (421), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/77 (90%), Positives = 75/77 (97%)

Query: 1   MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKF 60
           +GAHN IGQSEAW+ST+SLAKR RFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKF
Sbjct: 126 LGAHNTIGQSEAWFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKF 185

Query: 61  DHPVWVPEGGIPNWKEV 77
           DHP+WVPEGGIP+WKEV
Sbjct: 186 DHPIWVPEGGIPDWKEV 202



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 33  IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
           IYPQRPG+ +C  YM T  CKFG+ CKF HP+
Sbjct: 417 IYPQRPGQMECDFYMKTGECKFGERCKFHHPI 448


>GSVIVT01010980001 assembled CDS
          Length = 475

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 10/75 (13%)

Query: 1   MGAHNIIGQSEAWYSTSSLAKRYRFESASNLP--------IYPQRPGEKDCAHYMLTRTC 52
           +GA ++ G ++   ST +LA  Y    +S  P        ++P+RPG+++C +Y+ T  C
Sbjct: 252 VGAGSVYGVTQ-LPSTHTLAGPYASLPSSAGPSSSNQKEQVFPERPGQQECQYYLRTGDC 310

Query: 53  KFGDSCKFDHP-VWV 66
           KFG SC++ HP  WV
Sbjct: 311 KFGSSCRYHHPREWV 325


>GSVIVT01019119001 assembled CDS
          Length = 304

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 30 NLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP----VWVPEGGIPNW 74
          N+  YP RP E DCA+Y+ T  CKFG +CKF HP    + V   GI NW
Sbjct: 45 NILGYPLRPDEIDCAYYLRTGQCKFGSTCKFHHPQPSSMMVSLRGITNW 93



 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 33  IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
           ++P+RPG+ +C  YM T  CKFG  C+F HP
Sbjct: 188 VFPERPGQPECQFYMKTGDCKFGAVCRFHHP 218


>GSVIVT01007563001 assembled CDS
          Length = 484

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 34  YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
           YP RP   DC+ Y+ T TCKFG +CKF+HP+
Sbjct: 126 YPVRPDAVDCSFYLRTGTCKFGSNCKFNHPI 156



 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 35  PQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGG 70
           P R GEK+C +YM T +CK+G +C+F+HP     GG
Sbjct: 222 PIRMGEKECPYYMRTGSCKYGANCRFNHPDPTAAGG 257


>GSVIVT01017774001 assembled CDS
          Length = 478

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 34  YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
           YP RPGEK+C++Y+ T  CKFG++CKF HP
Sbjct: 138 YPLRPGEKECSYYVKTGLCKFGETCKFHHP 167



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 33  IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
           I+P+RPG+ +C +YM T  CKFG SCK+ HP
Sbjct: 299 IFPERPGQPECQYYMRTGDCKFGSSCKYHHP 329


>GSVIVT01019118001 assembled CDS
          Length = 111

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 25/30 (83%)

Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
          YP+RPGE DC++Y+ T  C+FG +C+F+HP
Sbjct: 45 YPERPGEPDCSYYIRTGLCRFGITCRFNHP 74


>GSVIVT01030514001 assembled CDS
          Length = 450

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEG 69
          YP RPGE DC +Y+ T  C +G +C+F+HP +  +G
Sbjct: 44 YPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQG 79