Jatropha Genome Database

JcCA0259651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0259651.10 + phase: 2 /pseudo/partial
         (377 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035648001 assembled CDS                                       308   2e-84

>GSVIVT01035648001 assembled CDS
          Length = 987

 Score =  308 bits (790), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/252 (60%), Positives = 187/252 (74%), Gaps = 1/252 (0%)

Query: 1   LNAKNGELLKHESAAFSGGFSGEXXXXXXXXXXXXXXXXXTLITVNFQNGDINFQKTYIS 60
           +N +NGE+LKH SAAF GGF GE                 +LI+++F +G+I+ Q+T+IS
Sbjct: 209 INVRNGEVLKHRSAAFPGGFCGEVSLVSSDTLVALDATRSSLISISFLDGEISLQQTHIS 268

Query: 61  DLIEDPLGTVKILPSKLTGMFTLTINSFTIFIRVISEGKLEVVDKINHVTAVSDALSF-S 119
           +L+ D  G   +LPSKL+GM  + I+++ +F+RV  EGKLEV +KIN   A        S
Sbjct: 269 NLVGDSFGMAVMLPSKLSGMLMIKIDNYMVFVRVADEGKLEVAEKINDAAAAVSDALALS 328

Query: 120 EGQQAFALIEHQDNDIYLIVKLGHDWNNDLLKERIKIDHQRGLVHKVFINNYIRTDRSHG 179
           EGQQAF L+EH  N I+L VKL +DWN DLLKE I++DHQRG VHK+FIN+YIRTDRSHG
Sbjct: 329 EGQQAFGLVEHGGNKIHLTVKLVNDWNGDLLKESIRMDHQRGCVHKIFINSYIRTDRSHG 388

Query: 180 FRALIVMEDHSLLLLQQGETVWSREDGLASIVDVTISELPVEKKGVSVAKVEQNLFEWLK 239
           FRALIVMEDHSLLLLQQGE VWSREDGLASI+DVT SELPVEK+GVSVAKVE NLFEWLK
Sbjct: 389 FRALIVMEDHSLLLLQQGEIVWSREDGLASIIDVTASELPVEKEGVSVAKVEHNLFEWLK 448

Query: 240 GRNLVLPVLIIL 251
           G  L L   ++L
Sbjct: 449 GHMLKLKGTLML 460