Jatropha Genome Database

JcCA0258941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0258941.10 + phase: 0 
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010807001 assembled CDS                                       189   4e-49
GSVIVT01037538001 assembled CDS                                        99   7e-22
GSVIVT01015059001 assembled CDS                                        79   8e-16
GSVIVT01015058001 assembled CDS                                        78   1e-15
GSVIVT01015060001 assembled CDS                                        78   1e-15
GSVIVT01033612001 assembled CDS                                        66   4e-12
GSVIVT01034422001 assembled CDS                                        59   7e-10
GSVIVT01008192001 assembled CDS                                        49   6e-07
GSVIVT01003830001 assembled CDS                                        48   1e-06
GSVIVT01003825001 assembled CDS                                        46   5e-06

>GSVIVT01010807001 assembled CDS
          Length = 365

 Score =  189 bits (479), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 99/108 (91%)

Query: 1   MKYWLEGPRTGRVEVVADLPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFYF 60
           MKYWLEGP++G VE+VA+LPGFPDNVRLNE+GQFWVAIDCCRT AQE+L+HNPW++N YF
Sbjct: 220 MKYWLEGPKSGIVELVANLPGFPDNVRLNERGQFWVAIDCCRTPAQEVLTHNPWLKNIYF 279

Query: 61  RLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEV 108
           RLPVK+S+LAR+MGMKMYTVISLFNE GEILEVLED  GLVM+L   +
Sbjct: 280 RLPVKLSMLARLMGMKMYTVISLFNEKGEILEVLEDRKGLVMRLAYSI 327


>GSVIVT01037538001 assembled CDS
          Length = 328

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 22/126 (17%)

Query: 1   MKYWLEGPRTGRVEVVADLPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFYF 60
           +KYWL+G + G  EV A LPG+PDNVR NEKG+FWVAI C RT  Q +L           
Sbjct: 220 VKYWLKGDKAGTSEVFAILPGYPDNVRTNEKGEFWVAIHCRRTMYQYLLH---------- 269

Query: 61  RLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGTV 120
                       +G +++ V+  ++  G+++++LED  G V++ VSEV E +GKLW+G+V
Sbjct: 270 ------------IGGRLHAVVVKYSPEGKLVKILEDSEGKVVRAVSEVEEREGKLWMGSV 317

Query: 121 AHNHIA 126
               +A
Sbjct: 318 LMPFVA 323


>GSVIVT01015059001 assembled CDS
          Length = 461

 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 1   MKYWLEGPRTGRVEVVAD-LPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFY 59
           +KYWL+G R GR EV  D LPG PDN+ L   G FW+A+     +    +  +   ++  
Sbjct: 331 LKYWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLV 390

Query: 60  FRLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGT 119
              P    LL  + GM+   ++     +G++++   DPNG VM  V+   E +  L++G+
Sbjct: 391 ATFP---KLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGS 447

Query: 120 VAHNHIATLP 129
           +  N I  LP
Sbjct: 448 LNTNFIGKLP 457


>GSVIVT01015058001 assembled CDS
          Length = 382

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 4/130 (3%)

Query: 1   MKYWLEGPRTGRVEVVAD-LPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFY 59
           +KYWLEG R GR E   D LPG PDNV L   G FW+A+    +   E +  +  +++  
Sbjct: 252 LKYWLEGERKGRTETFIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLL 311

Query: 60  FRLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGT 119
              P    L   + G      +     +G+I++  +DPNG V+  V+   E +  L++G+
Sbjct: 312 ATFP---KLFQLVKGSHKKASVVKVAADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGS 368

Query: 120 VAHNHIATLP 129
           +  N I  LP
Sbjct: 369 LNTNFIGILP 378


>GSVIVT01015060001 assembled CDS
          Length = 368

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 4/130 (3%)

Query: 1   MKYWLEGPRTGRVEVVAD-LPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFY 59
           +KYWL+G R GR E   D LP  PDN+ L   G FW+A+    +   E +  +  +++F 
Sbjct: 238 LKYWLKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFL 297

Query: 60  FRLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGT 119
              P    L   + G      +     +G+I++  +DPNG VM  V+   E +  L++G+
Sbjct: 298 ATFP---KLFQLVNGSNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGS 354

Query: 120 VAHNHIATLP 129
           +  N I  LP
Sbjct: 355 LNTNFIGKLP 364


>GSVIVT01033612001 assembled CDS
          Length = 365

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 24/121 (19%)

Query: 1   MKYWLEGPRTGRVEVVADLPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFYF 60
           +++WL+  + G VEV   LPGFPDN++ N KG+FWV +   + +  E     PWI     
Sbjct: 246 LRFWLQTSKAGTVEVFTLLPGFPDNIKRNSKGEFWVGMHSRKGKLVEWFLSYPWIGRTLL 305

Query: 61  RLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGTV 120
           +LP     L         +  S + + G I               SEV E  G LWIG+V
Sbjct: 306 KLPFPHGFL---------SFFSKWRKTGSI---------------SEVYERDGSLWIGSV 341

Query: 121 A 121
            
Sbjct: 342 T 342


>GSVIVT01034422001 assembled CDS
          Length = 340

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 30/128 (23%)

Query: 1   MKYWLEGPRTGRVEVVADLPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFYF 60
           +++WLEGPR+   +V A L G PDN+  N KG+FWVA              NP   +   
Sbjct: 237 LRFWLEGPRSQTRDVFAKLDGCPDNIERNPKGEFWVA-------------QNPKFDSIGT 283

Query: 61  RLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGTV 120
            L   +S L               +E G++L VL +  G     +S+V E    +W+G+V
Sbjct: 284 PLQTNISALK-------------LDEEGKVLRVLNEEFG----SLSDVIEKDDCMWLGSV 326

Query: 121 AHNHIATL 128
             +H+  +
Sbjct: 327 LQSHVGMI 334


>GSVIVT01008192001 assembled CDS
          Length = 1075

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 2   KYWLEGPRTGRVEVVADLPGFPDNVRLNEKGQFWVAID 39
           ++WL GP+    EV  +L G P N++ NE+G+FWVAI+
Sbjct: 650 RFWLGGPKANTSEVFMELLGKPSNIKRNERGEFWVAIN 687


>GSVIVT01003830001 assembled CDS
          Length = 457

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 14/131 (10%)

Query: 1   MKYWLEGPRTGRVEVVAD-LPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFY 59
           +KY ++G R G V+   D LPG PDN+  + +G +W+A+    + A ++    PWIR   
Sbjct: 325 LKYHIQGERKGSVDKFIDNLPGPPDNILYDGEGHYWIALPMGNSLAWDLALKYPWIRKV- 383

Query: 60  FRLPVKMSLLARMMGMKMYTVISLFNENGEILEVLEDPNGLVMKLVSEVREVKGKLWIGT 119
                       +  M+ Y V     +NG +L V  +           + EV   + IG 
Sbjct: 384 ------------VAIMERYKVRPHIEKNGGVLAVDLEGKPTAYYYDPSLSEVTSGVKIGN 431

Query: 120 VAHNHIATLPY 130
             +    T PY
Sbjct: 432 YLYCGSITKPY 442


>GSVIVT01003825001 assembled CDS
          Length = 269

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 35/145 (24%)

Query: 1   MKYWLEGPRTGRVEVVAD-LPGFPDNVRLNEKGQFWVAIDCCRTQAQEILSHNPWIRNFY 59
           +KY ++G R G ++   D LPG PDN+  + +G +W+A+    + A ++    PWIR   
Sbjct: 137 LKYHIQGERKGSMDKFIDNLPGPPDNILYDGEGHYWIALPMGNSLAWDLALKYPWIRKV- 195

Query: 60  FRLPVKMSLLARMMGMKMYTVISLFNENGEILEV---------LEDPNGLVMKLVSEVRE 110
                       +  M+ Y V     +NG +L V           DP    +  VS   +
Sbjct: 196 ------------VAIMERYKVRPHIEKNGGVLAVDLEGKPTAYYHDPG---LSEVSSGVK 240

Query: 111 VKGKLWIGTVA---------HNHIA 126
           +   L+ G+VA         H H+A
Sbjct: 241 IGNYLYCGSVAKPYMIRLDLHQHVA 265