Jatropha Genome Database

JcCA0258491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0258491.10 - phase: 0 /partial
         (219 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015855001 assembled CDS                                       339   6e-94
GSVIVT01012136001 assembled CDS                                       336   5e-93
GSVIVT01035161001 assembled CDS                                       108   1e-24
GSVIVT01029831001 assembled CDS                                       102   1e-22

>GSVIVT01015855001 assembled CDS
          Length = 305

 Score =  339 bits (870), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 158/172 (91%), Positives = 164/172 (95%)

Query: 31  VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEITHKYKGKTVMTESERYESL 90
           VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDE THK+KGKTVM E ERYESL
Sbjct: 27  VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMNEVERYESL 86

Query: 91  HHCKWVDEVITDAPWVITQEFLDKHNIDYVAHDSLPYADASGAGKDVYEFVKKVGRFKET 150
            HCKWVDEVI DAPWV+TQEFLDKH IDYVAHDSLPYADASGAG DVYEFVK +G+FKET
Sbjct: 87  RHCKWVDEVIPDAPWVLTQEFLDKHKIDYVAHDSLPYADASGAGNDVYEFVKSIGKFKET 146

Query: 151 KRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKELGVSFVKEKRLRVNMRL 202
           KRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRK+LGVS+VKEKRLRVNMRL
Sbjct: 147 KRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKDLGVSYVKEKRLRVNMRL 198


>GSVIVT01012136001 assembled CDS
          Length = 289

 Score =  336 bits (861), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 157/172 (91%), Positives = 165/172 (95%)

Query: 31  VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEITHKYKGKTVMTESERYESL 90
           VRVYADGIYDLFHFGHARSLEQAKK FPNTYLLVGCCNDE+THKYKGKTVMT SERYESL
Sbjct: 11  VRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEVTHKYKGKTVMTGSERYESL 70

Query: 91  HHCKWVDEVITDAPWVITQEFLDKHNIDYVAHDSLPYADASGAGKDVYEFVKKVGRFKET 150
            HC+WVDEVI DAPWV+TQEF+DKH IDYVAHDSLPYADASGAGKDVYEFVK +G+FKET
Sbjct: 71  RHCRWVDEVIPDAPWVLTQEFIDKHEIDYVAHDSLPYADASGAGKDVYEFVKSIGKFKET 130

Query: 151 KRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKELGVSFVKEKRLRVNMRL 202
           KRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRK+LGVS+VKEKRLRVNM L
Sbjct: 131 KRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKDLGVSYVKEKRLRVNMGL 182


>GSVIVT01035161001 assembled CDS
          Length = 362

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 8/135 (5%)

Query: 36  DGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEITHKYKGKTVMTESERYESLHHCKW 95
           DG +DL H+GHA +L QAK       L+VG  +DE     KG  V++  ER   +   KW
Sbjct: 2   DGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLVLVSGLKW 59

Query: 96  VDEVITDAPWVITQEFLD----KHNIDYVAHDSLPYADASGAGKDVYEFVKKVGRFKETK 151
           VDEVI +AP+ IT++F+D    +H IDY+ H   P     G   D Y   KK GR+K+ K
Sbjct: 60  VDEVIANAPYAITEQFMDTLFNEHKIDYIIHGDDPCLLPDGT--DAYALAKKAGRYKQIK 117

Query: 152 RTDGISTSDIIMRIV 166
           RT+G+S++DI+ RI+
Sbjct: 118 RTEGVSSTDIVGRIL 132



 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 7/157 (4%)

Query: 33  VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEITHKYKGK--TVMTESERYESL 90
           VY DG +DLFH GH   L+ A++     +LLVG   D+   +++G    +M   ER  S+
Sbjct: 198 VYIDGAFDLFHAGHVEILKNARQL--GDFLLVGIHTDQTVSEHRGAHYPIMHLHERSLSV 255

Query: 91  HHCKWVDEVITDAPWVITQEFLDKHNIDYVAHDSLPYADA--SGAGKDVYEFVKKVGRFK 148
             C++VDEVI  APW +T++ +   NI  V H ++  +++  +GA +D YE  K +G F 
Sbjct: 256 LACRYVDEVIIGAPWDVTKDMITTFNISLVVHGTVAESNSFLNGA-RDPYEVPKSMGIFH 314

Query: 149 ETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKE 185
             +    I+T+ +  RI+ ++  Y+ RN+ +  + K+
Sbjct: 315 MLESPKDITTTSVAQRIIANHEAYMKRNVKKAESEKK 351


>GSVIVT01029831001 assembled CDS
          Length = 362

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 8/135 (5%)

Query: 36  DGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEITHKYKGKTVMTESERYESLHHCKW 95
           DG +D+ H+GH  +L QA+       L+VG  +D      KG  V   +ER   +   KW
Sbjct: 2   DGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEITANKGPPVTPLNERMIMVSGVKW 59

Query: 96  VDEVITDAPWVITQEFL----DKHNIDYVAHDSLPYADASGAGKDVYEFVKKVGRFKETK 151
           VDEVI DAP+ IT++F+    D++NIDY+ H   P     G   D Y   KK GR+K+ K
Sbjct: 60  VDEVIPDAPYAITEDFMKKLFDEYNIDYIIHGDDPCILPDGT--DAYALAKKAGRYKQIK 117

Query: 152 RTDGISTSDIIMRIV 166
           RT+G+S++DI+ R++
Sbjct: 118 RTEGVSSTDIVGRML 132



 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 33  VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEITHKYKG--KTVMTESERYESL 90
           VY DG +DLFH GH   L+ A+      +LLVG   D+     +G  + +M   ER  S+
Sbjct: 198 VYIDGAFDLFHAGHVEILKLARGL--GDFLLVGIHTDQTVSANRGAHRPIMNLHERSLSV 255

Query: 91  HHCKWVDEVITDAPWVITQEFLDKHNIDYVAHDSLP-YADASGAGKDVYEFVKKVGRFKE 149
             C++VDEVI  APW ++++ +   NI  V H ++  Y +     +D Y     +G +++
Sbjct: 256 LACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAEYNNFPKGKEDPYAIPISLGIYEQ 315

Query: 150 TKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRK 184
            +    I+T+ II RIV ++  Y  RN  +  + K
Sbjct: 316 LESPLDITTTTIIRRIVSNHEAYQKRNEKKAESEK 350