Jatropha Genome Database

JcCA0257621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257621.10 - phase: 0 
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003687001 assembled CDS                                        88   1e-18

>GSVIVT01003687001 assembled CDS
          Length = 6988

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%)

Query: 9  MEFIVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKL 68
          M  +VSSLS+SF+QVP   IP MLDCILA+T  S +SLF  LLD+F +L+KD  K+ +KL
Sbjct: 1  MASLVSSLSNSFRQVPQAGIPAMLDCILAATASSPSSLFALLLDAFHDLTKDIAKDGKKL 60

Query: 69 DSGCCDFLMSIVGALCHLLKKLG 91
          DS  C+ + S V  +CHLL+K G
Sbjct: 61 DSDQCNHVSSFVCGVCHLLEKSG 83