Jatropha Genome Database

JcCA0257131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257131.10 + phase: 2 /pseudo/partial
         (315 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011242001 assembled CDS                                       416   e-117
GSVIVT01013229001 assembled CDS                                       408   e-114

>GSVIVT01011242001 assembled CDS
          Length = 560

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/286 (71%), Positives = 232/286 (81%), Gaps = 1/286 (0%)

Query: 29  DKFFRCASLDGDADRLVYFSVPSSDSSTIDLVDGDKILSLFAVFIKEQLAVLNTEGEEKI 88
           D   RCASLDGDADRLVYF V   D++ IDL+DGDKILSLFA+F+KEQLA+LNT G EKI
Sbjct: 275 DVGLRCASLDGDADRLVYFLVLPKDNN-IDLIDGDKILSLFALFVKEQLAILNTNGNEKI 333

Query: 89  SDDYQARVGVIQTAYANGASTYYLKQLGLEVVFTPTGVKYLHEKAAQYDIGIYFEANGHG 148
           ++ Y AR+GV+QTAYANGAST YLK+ GLEV+FTPTGVKYLHEKAA++DIGIYFEANGHG
Sbjct: 334 NNYYHARLGVVQTAYANGASTDYLKKQGLEVLFTPTGVKYLHEKAAEFDIGIYFEANGHG 393

Query: 149 TILFSESFLSWLEERCNELSSKNKDSEQHKAALRLLAVSRLINQAVGDALSGLLLVEAIL 208
           TILFSE FL WLE R NELSS +K SEQ KAALRLLAVS+LINQAVGDALSGLLLVEAIL
Sbjct: 394 TILFSEEFLCWLEARDNELSSMSKGSEQKKAALRLLAVSKLINQAVGDALSGLLLVEAIL 453

Query: 209 RHMGWSIHKWAELYQDLPSRQIKXXXXXXXXXXXXXXXXXXXKPLGIQDAINAQVAKYSH 268
           RHMGWSIH W  LYQDLPSRQ+K                   KP G+++AINA++AKY  
Sbjct: 454 RHMGWSIHIWNALYQDLPSRQLKVKVVDRTAVVTENAETVVVKPPGLREAINAEIAKYPQ 513

Query: 269 GRCFIRPSGTEDFIRVYAEASTQEEADSLAGSVTKLVDQYLGFYGS 314
           GR F+RPSGTED IRVYAEASTQ+ ADSL  SV +LVD++LGF  S
Sbjct: 514 GRSFVRPSGTEDIIRVYAEASTQDAADSLGNSVARLVDKFLGFSSS 559


>GSVIVT01013229001 assembled CDS
          Length = 560

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/286 (70%), Positives = 229/286 (80%), Gaps = 1/286 (0%)

Query: 29  DKFFRCASLDGDADRLVYFSVPSSDSSTIDLVDGDKILSLFAVFIKEQLAVLNTEGEEKI 88
           D   RCASLDGDADRLVYF V   D+  IDLVDGDKILSLFA+F+KEQLA+LNT G EKI
Sbjct: 275 DVGLRCASLDGDADRLVYFLVLPKDNK-IDLVDGDKILSLFALFVKEQLAILNTNGNEKI 333

Query: 89  SDDYQARVGVIQTAYANGASTYYLKQLGLEVVFTPTGVKYLHEKAAQYDIGIYFEANGHG 148
           ++ Y A +GV+QTAYANGAST YLK+ GLEV+FTPTGVKYLHEKAA++DIGIYFEANGHG
Sbjct: 334 NNYYHACLGVVQTAYANGASTDYLKKQGLEVLFTPTGVKYLHEKAAEFDIGIYFEANGHG 393

Query: 149 TILFSESFLSWLEERCNELSSKNKDSEQHKAALRLLAVSRLINQAVGDALSGLLLVEAIL 208
           TILFSE FL WLE R NELSS +K SEQ KAA RLLAVS+LINQAVGDALSGLLLVEAIL
Sbjct: 394 TILFSEEFLCWLEARDNELSSMSKGSEQQKAASRLLAVSKLINQAVGDALSGLLLVEAIL 453

Query: 209 RHMGWSIHKWAELYQDLPSRQIKXXXXXXXXXXXXXXXXXXXKPLGIQDAINAQVAKYSH 268
           +HMGWSIH W  LYQDLPSRQ+K                   KP G+Q+AINA++AKY  
Sbjct: 454 QHMGWSIHIWNALYQDLPSRQLKVKVVDRTAIVTANAETVVVKPPGLQEAINAEIAKYPQ 513

Query: 269 GRCFIRPSGTEDFIRVYAEASTQEEADSLAGSVTKLVDQYLGFYGS 314
           GR F+RPSGTED IRVYAEA+TQ+ ADSL  SV +LVD++LGF  S
Sbjct: 514 GRSFVRPSGTEDIIRVYAEATTQDAADSLGNSVARLVDKFLGFGSS 559