Jatropha Genome Database

JcCA0255541.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0255541.10 + phase: 0 
         (90 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017334001 assembled CDS                                       114   1e-26
GSVIVT01029838001 assembled CDS                                        67   2e-12
GSVIVT01022520001 assembled CDS                                        67   2e-12
GSVIVT01019427001 assembled CDS                                        57   2e-09
GSVIVT01029832001 assembled CDS                                        47   2e-06
GSVIVT01019780001 assembled CDS                                        47   2e-06
GSVIVT01019781001 assembled CDS                                        45   6e-06

>GSVIVT01017334001 assembled CDS
          Length = 207

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 61/75 (81%)

Query: 1  MKGGLVVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVV 60
          MK G VV+ GFIY++E  LTV KTSLFF  DGFTVYD KG LVFRVDSY PD RD GE++
Sbjct: 1  MKAGAVVEEGFIYEEEIQLTVFKTSLFFTGDGFTVYDPKGTLVFRVDSYEPDARDKGELI 60

Query: 61 LMDAHGRCLLTVRKK 75
          LMDA GRCLLTVR+K
Sbjct: 61 LMDASGRCLLTVRRK 75


>GSVIVT01029838001 assembled CDS
          Length = 159

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 12 IYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLT 71
          + +D  +LTV K SL F  +GFTV+D KG LVFRVD+Y    +  GE+VLMDA G+ LLT
Sbjct: 24 VGRDAAVLTVWKKSLLFNCNGFTVFDGKGNLVFRVDNYVAGHK--GEIVLMDASGKPLLT 81

Query: 72 VRKKVIYI 79
          +R+K + +
Sbjct: 82 IRRKRLSL 89


>GSVIVT01022520001 assembled CDS
          Length = 200

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 15 DEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRK 74
          D  +LTV K SL F   GFTV+D KG LVFRVD+Y    +  GE+VLMDA G+ LLT+R+
Sbjct: 26 DPAVLTVWKKSLLFNCSGFTVFDGKGNLVFRVDNYVAGNK--GEIVLMDASGKPLLTIRR 83

Query: 75 K 75
          K
Sbjct: 84 K 84


>GSVIVT01019427001 assembled CDS
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 15 DEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRK 74
          D + LTV + SL F+  GFTV D  G+LV+RVD+Y    +  GEV LMDA G+ +LTVR+
Sbjct: 33 DCRSLTVWRKSLLFSCTGFTVIDSYGDLVYRVDNY--IGQRPGEVTLMDASGKSVLTVRR 90

Query: 75 K 75
          +
Sbjct: 91 R 91


>GSVIVT01029832001 assembled CDS
          Length = 187

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 7/61 (11%)

Query: 27 FFANDGFTVYDCKGELVFRVDSYGPDTRDTGEV----VLMDAHGRCLLTVRKKVIYISLP 82
          F   DGFTV+D  G L FRVD+Y   +R  G V    VLMD  G+ LLT++ +++ +   
Sbjct: 3  FQGTDGFTVFDQHGRLAFRVDNY---SRKKGHVKGGLVLMDGAGKALLTLKPQILNMQYQ 59

Query: 83 F 83
          +
Sbjct: 60 W 60


>GSVIVT01019780001 assembled CDS
          Length = 399

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 12  IYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLT 71
           I    +  T+   SL    +G+TV++  GE+V+R+D+Y  D + + EV LMD  G+ L T
Sbjct: 217 ITSRRETFTLWMKSLVIQGNGYTVFNSDGEIVYRIDNY--DKKCSSEVYLMDLQGKVLFT 274

Query: 72  VRKKVIYI 79
           + ++ +++
Sbjct: 275 ILQRKLHV 282



 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 11 FIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLL 70
          +I    +  T+   SL    +G+TV++  GE+V+R+D+Y  D + + EV LMD  G+ L 
Sbjct: 19 YITSRRETFTLWMKSLVIRGNGYTVFNSDGEIVYRMDNY--DKKCSSEVYLMDLQGKVLF 76

Query: 71 TVRKKVIYI 79
          T+ ++ + +
Sbjct: 77 TILRRKLRV 85


>GSVIVT01019781001 assembled CDS
          Length = 210

 Score = 45.1 bits (105), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 12 IYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLT 71
          I    +  T+   SL    +G TV++  GE+V+R+D+Y  D + + EV LMD  G+ L T
Sbjct: 22 ITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNY--DKKCSSEVYLMDLQGKVLFT 79

Query: 72 VRKKVIYI 79
          + ++ + +
Sbjct: 80 ILQRKLRV 87