Jatropha Genome Database

JcCA0255301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0255301.10 + phase: 0 
         (508 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       429   e-120
GSVIVT01003228001 assembled CDS                                       308   3e-84

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/469 (48%), Positives = 288/469 (61%), Gaps = 56/469 (11%)

Query: 45  DNATNFLFDSGFAEEPCLSRYQSVIYRKHSPYKPSPYLLSKLLNYEILHKQCEPYTKSYN 104
           D     L D+GF E  CLSRYQS +YRK   +KPS YLLSKL +YE LHK+C PYT+SYN
Sbjct: 96  DKLLGGLLDAGFNERSCLSRYQSALYRKELLHKPSSYLLSKLRSYEALHKRCGPYTESYN 155

Query: 105 QTIKAINSVNISSPTECNYIVWTPLEGLGNRILTMASAFLYAILTNRVLLVEHESDMADL 164
           +T+K +        ++CNY+VW    GLGNRILT+ASAFLYAILTNRVLLV+  +DM DL
Sbjct: 156 RTLKQLQLGQHMEQSDCNYLVWISFSGLGNRILTLASAFLYAILTNRVLLVDPGADMPDL 215

Query: 165 FCEPFPNTSWSLPQDFPLKSEFRKVSHQYPHVFQNLISINTINASSES-LPSVVNILLA- 222
           FCEPFP  SW LP DFPLK+EF     + P  +  ++   T+  SS S LP  V + L  
Sbjct: 216 FCEPFPEVSWLLPLDFPLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLVH 275

Query: 223 --GGKDKTFYCEEQQQLVQKIPWLILKSDEYFIPSLFLIPSFKQELDSIFPDKETVFHFL 280
                DK F+C + Q  ++KIP LI+K+D YF+PSLFLIPSF+QEL              
Sbjct: 276 DYDDHDKMFFCNQDQSFLRKIPCLIIKTDNYFVPSLFLIPSFEQEL-------------- 321

Query: 281 GRYLFNPSNEAWGLITRFYEAYLAKADQRIGFQIRVFNPNATSFQILTDQIIACSQQQNL 340
                                              +F+     FQ + DQIIAC+  +NL
Sbjct: 322 -----------------------------------IFDTGIGPFQHVLDQIIACTMTENL 346

Query: 341 LAQVDESKTAAFSSKTRTSSKSILITSLYSKFYEEIRNKYWRFPTRTGESIGVYQLSHEE 400
           L +++  +    SS     SK++L+TSL + ++E++RN YW  PT TGE IGVYQ SHEE
Sbjct: 347 LPEIN-MREPVVSSYGHKKSKAVLMTSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPSHEE 405

Query: 401 NQRFGDNMHNMKAWVEINLLSMSDMLVTSSKSTFGYVAQGLGGLKPWILKKPENWRTNDT 460
            Q+     HN KAW E+ LLS++D+LVTSS STFGYVAQGLGGLKPWIL KPEN    D 
Sbjct: 406 YQQTEKQNHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPDP 465

Query: 461 ACGVAMSIEPCFHDPPLYGCKSKIKIDS--IFPYVKHCEDEPAGLKLFN 507
            C  AMS+EPCFH PP Y CK+K  +D+  + P+V+HCED   GLKL +
Sbjct: 466 PCRRAMSMEPCFHAPPFYDCKAKKGVDTGALVPHVRHCEDMSWGLKLVD 514


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/256 (58%), Positives = 190/256 (74%), Gaps = 3/256 (1%)

Query: 45  DNATNFLFDSGFAEEPCLSRYQSVIYRKHSPYKPSPYLLSKLLNYEILHKQCEPYTKSYN 104
           D+    L  +GF E+ CLSRYQS +YRK SPYKPS YLLS+L  YE LHK C P+TKSY 
Sbjct: 82  DSLLGGLLAAGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHCGPHTKSYR 141

Query: 105 QTIKAINSVNISSPTECNYIVWTPLEGLGNRILTMASAFLYAILTNRVLLVEHESDMADL 164
           +TIK + S +   PT+CNY+VW    GLGNRILT+ASAFLYA+LTNRVLLV+   DMADL
Sbjct: 142 KTIKLLKSGHSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGKDMADL 201

Query: 165 FCEPFPNTSWSLPQDFPLKSEFRKVSHQYPHVFQNLISINTINASSESLPSVVNILLA-- 222
           FCEPFP  SW LP DFPL  +F  ++ + PH F  ++  N IN+S+E  P  + I L+  
Sbjct: 202 FCEPFPEKSWLLPLDFPLLPKFNSINKESPHCFGKMLKNNIINSSTEQPPPFLYIYLSHD 261

Query: 223 -GGKDKTFYCEEQQQLVQKIPWLILKSDEYFIPSLFLIPSFKQELDSIFPDKETVFHFLG 281
            G  DK F+C+++Q L+ K+PWLI+K++ YF+PSLFL+PSF+QEL  +FP+KET FH LG
Sbjct: 262 YGDHDKLFFCDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPEKETTFHHLG 321

Query: 282 RYLFNPSNEAWGLITR 297
           RYLF+PSN+ WGLITR
Sbjct: 322 RYLFHPSNQVWGLITR 337



 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 90/131 (68%), Gaps = 2/131 (1%)

Query: 377 RNKYWRFPTRTGESIGVYQLSHEENQRFGDNMHNMKAWVEINLLSMSDMLVTSSKSTFGY 436
           RN YW     +GE + VYQ SHEE Q+     HN KAW E+ LLS ++ L+TS+ STFGY
Sbjct: 337 RNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGY 396

Query: 437 VAQGLGGLKPWILKKPENWRTNDTACGVAMSIEPCFHDPPLYGCKSKIKIDS--IFPYVK 494
           VAQGLGG+ PWIL KP+N    D  CG AMS+EPCFH PP Y CK+K  +D+  + P+V+
Sbjct: 397 VAQGLGGVTPWILYKPQNRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVR 456

Query: 495 HCEDEPAGLKL 505
           HCED   GLKL
Sbjct: 457 HCEDMSWGLKL 467