Jatropha Genome Database

JcCA0254771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254771.20 + phase: 0 
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009902001 assembled CDS                                       117   1e-27
GSVIVT01034477001 assembled CDS                                        95   7e-21
GSVIVT01034476001 assembled CDS                                        90   2e-19
GSVIVT01007817001 assembled CDS                                        85   8e-18
GSVIVT01020178001 assembled CDS                                        84   1e-17
GSVIVT01032528001 assembled CDS                                        76   4e-15
GSVIVT01009384001 assembled CDS                                        59   3e-10
GSVIVT01033563001 assembled CDS                                        58   9e-10
GSVIVT01008003001 assembled CDS                                        57   2e-09
GSVIVT01037887001 assembled CDS                                        56   4e-09
GSVIVT01003388001 assembled CDS                                        53   3e-08
GSVIVT01000168001 assembled CDS                                        52   7e-08

>GSVIVT01009902001 assembled CDS
          Length = 98

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 1/99 (1%)

Query: 1  MVISKFLLASLFISLFVLQLAKATQTENTNLNASPIPKIDCGSACSNRCRLASRQRLCHR 60
          M ISK L+ASL ISL V Q+ +A  T      +SP  K+DCG ACS RCRL+SR  LC+R
Sbjct: 1  MAISKTLIASLLISLLVYQITEAATTSGDGA-SSPTEKMDCGGACSARCRLSSRPNLCNR 59

Query: 61 ACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
          ACGTCCARCNCVPPGTSGN E+CPCYA++TT G  RKCP
Sbjct: 60 ACGTCCARCNCVPPGTSGNQEICPCYANMTTRGNERKCP 98


>GSVIVT01034477001 assembled CDS
          Length = 112

 Score = 94.7 bits (234), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 1   MVISKFLLASLFISLFVLQLAKATQT-ENTNLNASPIP-KIDCGSACSNRCRLASRQRLC 58
           +++  F  ASL IS     L    ++ +   L+    P KI+C  ACS RCR ASR+ +C
Sbjct: 12  LLLQAFAEASLVISNAEHSLTSVDESRDEVALHKKSHPRKINCSYACSRRCRKASRKNVC 71

Query: 59  HRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
            RAC TCC RC+CVPPGT GN  +CPCYASL THG + KCP
Sbjct: 72  SRACKTCCKRCHCVPPGTYGNKNMCPCYASLKTHGHKPKCP 112


>GSVIVT01034476001 assembled CDS
          Length = 74

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 46/60 (76%)

Query: 40 DCGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
          DC S C+ RC  A   +LC RAC TCC RCNCVPPGT+GN +VCPCYA +TTHGGR KCP
Sbjct: 15 DCKSKCAYRCSKAGWHKLCLRACNTCCERCNCVPPGTAGNEDVCPCYAKMTTHGGRHKCP 74


>GSVIVT01007817001 assembled CDS
          Length = 111

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 32  NASPIPKIDCGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVC-PCYASLT 90
           N   +  IDCG  C +RC L SR  +C RACGTCC RC CVPPGTSGN E+C  CY  +T
Sbjct: 43  NRRLMQDIDCGGLCKDRCSLHSRPNVCVRACGTCCVRCKCVPPGTSGNRELCGKCYTDMT 102

Query: 91  THGGRRKCP 99
           THG + KCP
Sbjct: 103 THGNKTKCP 111


>GSVIVT01020178001 assembled CDS
          Length = 108

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 13/102 (12%)

Query: 11  LFISLFVLQLAKATQTENTNLNASP------------IPKIDCGSACSNRCRLASRQRLC 58
           L +++ +  +A+A+  +N                   +P +DCG  C  RC L SR  +C
Sbjct: 7   LLVTIMLFCIAEASSDDNNIFEHQHNQAVKGSAGRRLLPFLDCGGLCKERCSLHSRPNVC 66

Query: 59  HRACGTCCARCNCVPPGTSGNHEVC-PCYASLTTHGGRRKCP 99
            RACGTCC RC CVPPGT GN E+C  CY  +TTHG + KCP
Sbjct: 67  TRACGTCCVRCKCVPPGTYGNREMCGTCYTEMTTHGNKPKCP 108


>GSVIVT01032528001 assembled CDS
          Length = 298

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 38  KIDCGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVC-PCYASLTTHGGRR 96
           ++DC   C  RC+  SR+ +C RAC TCC RC CVPPGT GN E C  CY  +TTHG + 
Sbjct: 236 RLDCIPLCDQRCKAHSRKNICVRACMTCCDRCKCVPPGTYGNREKCGKCYTDMTTHGNKP 295

Query: 97  KCP 99
           KCP
Sbjct: 296 KCP 298


>GSVIVT01009384001 assembled CDS
          Length = 88

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 2  VISKFLLASLFISLFVLQLAKATQTENTNLNASPIPKIDCGSACSNRCRLASRQRLCHRA 61
          +++ FLL  L +S   +Q A A  +              C S C+ RC  A  +  C + 
Sbjct: 4  LLATFLLVFLVLSSSFVQNAMAGSSF-------------CDSKCAARCSKAGMKDRCLKY 50

Query: 62 CGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
          CG CC  C CVP GT GN   CPCY       G+ KCP
Sbjct: 51 CGICCEECKCVPSGTYGNKHECPCYKDKKNSKGQPKCP 88


>GSVIVT01033563001 assembled CDS
          Length = 106

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%)

Query: 40  DCGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
           +C   C+ RC   + ++ C   C  CCA+C CVPPGT GN + CPCY +  T  G  KCP
Sbjct: 47  ECAPRCTTRCSKTAYKKPCMFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 106


>GSVIVT01008003001 assembled CDS
          Length = 104

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 32/60 (53%)

Query: 40  DCGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
            C S C+ RC      + C   C  CCA+C CVPPG  GN  VCPCY +  T  G  KCP
Sbjct: 45  QCPSQCTRRCSKTQYHKPCMFFCQKCCAKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 104


>GSVIVT01037887001 assembled CDS
          Length = 88

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 31/59 (52%)

Query: 41 CGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
          CG  CS RC  A+    C + CG CC  C CVP GT GN   CPCY       G+ KCP
Sbjct: 30 CGLKCSKRCSQAAVLDRCMKYCGICCQECKCVPSGTYGNKHECPCYRDKKNSKGKPKCP 88


>GSVIVT01003388001 assembled CDS
          Length = 106

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 31/61 (50%)

Query: 39  IDCGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKC 98
           + C  AC+ RC        C   C  CC +C CVP GT G+ E CPCY +  T  G  KC
Sbjct: 46  VKCPKACNYRCSDTQYLNACLEFCNLCCQKCLCVPSGTYGHKEECPCYNNWKTKEGGPKC 105

Query: 99  P 99
           P
Sbjct: 106 P 106


>GSVIVT01000168001 assembled CDS
          Length = 67

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 29/59 (49%)

Query: 41 CGSACSNRCRLASRQRLCHRACGTCCARCNCVPPGTSGNHEVCPCYASLTTHGGRRKCP 99
          C S C  RC  A     C + CG CC  C CVP GT GN   CPCY       G+ KCP
Sbjct: 9  CDSKCGVRCANAGVYDRCVKYCGICCQECKCVPSGTYGNKSECPCYRDKLNSKGKPKCP 67