Jatropha Genome Database

JcCA0254771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254771.10 + phase: 0 
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009902001 assembled CDS                                       111   7e-26
GSVIVT01007817001 assembled CDS                                        91   2e-19
GSVIVT01020178001 assembled CDS                                        88   8e-19
GSVIVT01034477001 assembled CDS                                        85   8e-18
GSVIVT01034476001 assembled CDS                                        82   4e-17
GSVIVT01032528001 assembled CDS                                        77   2e-15
GSVIVT01009384001 assembled CDS                                        58   8e-10
GSVIVT01033563001 assembled CDS                                        55   5e-09
GSVIVT01037887001 assembled CDS                                        55   6e-09
GSVIVT01003388001 assembled CDS                                        55   9e-09
GSVIVT01008003001 assembled CDS                                        53   3e-08
GSVIVT01000168001 assembled CDS                                        52   6e-08

>GSVIVT01009902001 assembled CDS
          Length = 98

 Score =  111 bits (278), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 59/70 (84%)

Query: 34  DATNSPAEEIDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASL 93
           D  +SP E++DCG AC+ARC+LSSRPNLC RACGTCCARC CVPPGT+GN E CPCYA++
Sbjct: 29  DGASSPTEKMDCGGACSARCRLSSRPNLCNRACGTCCARCNCVPPGTSGNQEICPCYANM 88

Query: 94  TTHGGRRKCP 103
           TT G  RKCP
Sbjct: 89  TTRGNERKCP 98


>GSVIVT01007817001 assembled CDS
          Length = 111

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 40  AEEIDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEAC-PCYASLTTHGG 98
            ++IDCG  C  RC L SRPN+C RACGTCC RCKCVPPGT+GN E C  CY  +TTHG 
Sbjct: 47  MQDIDCGGLCKDRCSLHSRPNVCVRACGTCCVRCKCVPPGTSGNRELCGKCYTDMTTHGN 106

Query: 99  RRKCP 103
           + KCP
Sbjct: 107 KTKCP 111


>GSVIVT01020178001 assembled CDS
          Length = 108

 Score = 88.2 bits (217), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 21  FAEADHQTVKSKLDATNSPAEEIDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGT 80
           F    +Q VK        P   +DCG  C  RC L SRPN+C RACGTCC RCKCVPPGT
Sbjct: 27  FEHQHNQAVKGSAGRRLLPF--LDCGGLCKERCSLHSRPNVCTRACGTCCVRCKCVPPGT 84

Query: 81  AGNYEAC-PCYASLTTHGGRRKCP 103
            GN E C  CY  +TTHG + KCP
Sbjct: 85  YGNREMCGTCYTEMTTHGNKPKCP 108


>GSVIVT01034477001 assembled CDS
          Length = 112

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 41  EEIDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRR 100
            +I+C  AC+ RC+ +SR N+C RAC TCC RC CVPPGT GN   CPCYASL THG + 
Sbjct: 50  RKINCSYACSRRCRKASRKNVCSRACKTCCKRCHCVPPGTYGNKNMCPCYASLKTHGHKP 109

Query: 101 KCP 103
           KCP
Sbjct: 110 KCP 112


>GSVIVT01034476001 assembled CDS
          Length = 74

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 42/60 (70%)

Query: 44  DCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103
           DC S C  RC  +    LC RAC TCC RC CVPPGTAGN + CPCYA +TTHGGR KCP
Sbjct: 15  DCKSKCAYRCSKAGWHKLCLRACNTCCERCNCVPPGTAGNEDVCPCYAKMTTHGGRHKCP 74


>GSVIVT01032528001 assembled CDS
          Length = 298

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 43  IDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEAC-PCYASLTTHGGRRK 101
           +DC   C  RC+  SR N+C RAC TCC RCKCVPPGT GN E C  CY  +TTHG + K
Sbjct: 237 LDCIPLCDQRCKAHSRKNICVRACMTCCDRCKCVPPGTYGNREKCGKCYTDMTTHGNKPK 296

Query: 102 CP 103
           CP
Sbjct: 297 CP 298


>GSVIVT01009384001 assembled CDS
          Length = 88

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 37/75 (49%)

Query: 29  VKSKLDATNSPAEEIDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACP 88
           V S     N+ A    C S C ARC  +   + C + CG CC  CKCVP GT GN   CP
Sbjct: 14  VLSSSFVQNAMAGSSFCDSKCAARCSKAGMKDRCLKYCGICCEECKCVPSGTYGNKHECP 73

Query: 89  CYASLTTHGGRRKCP 103
           CY       G+ KCP
Sbjct: 74  CYKDKKNSKGQPKCP 88


>GSVIVT01033563001 assembled CDS
          Length = 106

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%)

Query: 44  DCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103
           +C   CT RC  ++    C   C  CCA+C CVPPGT GN + CPCY +  T  G  KCP
Sbjct: 47  ECAPRCTTRCSKTAYKKPCMFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 106


>GSVIVT01037887001 assembled CDS
          Length = 88

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%)

Query: 45  CGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103
           CG  C+ RC  ++  + C + CG CC  CKCVP GT GN   CPCY       G+ KCP
Sbjct: 30  CGLKCSKRCSQAAVLDRCMKYCGICCQECKCVPSGTYGNKHECPCYRDKKNSKGKPKCP 88


>GSVIVT01003388001 assembled CDS
          Length = 106

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%)

Query: 43  IDCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKC 102
           + C  AC  RC  +   N C   C  CC +C CVP GT G+ E CPCY +  T  G  KC
Sbjct: 46  VKCPKACNYRCSDTQYLNACLEFCNLCCQKCLCVPSGTYGHKEECPCYNNWKTKEGGPKC 105

Query: 103 P 103
           P
Sbjct: 106 P 106


>GSVIVT01008003001 assembled CDS
          Length = 104

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 31/60 (51%)

Query: 44  DCGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103
            C S CT RC  +     C   C  CCA+C CVPPG  GN   CPCY +  T  G  KCP
Sbjct: 45  QCPSQCTRRCSKTQYHKPCMFFCQKCCAKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 104


>GSVIVT01000168001 assembled CDS
          Length = 67

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 31/59 (52%)

Query: 45  CGSACTARCQLSSRPNLCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103
           C S C  RC  +   + C + CG CC  CKCVP GT GN   CPCY       G+ KCP
Sbjct: 9   CDSKCGVRCANAGVYDRCVKYCGICCQECKCVPSGTYGNKSECPCYRDKLNSKGKPKCP 67