Jatropha Genome Database

JcCA0254141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254141.20 + phase: 0 /partial
         (352 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012724001 assembled CDS                                       237   6e-63
GSVIVT01007868001 assembled CDS                                        60   1e-09

>GSVIVT01012724001 assembled CDS
          Length = 1445

 Score =  237 bits (605), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 135/183 (73%), Gaps = 4/183 (2%)

Query: 1    MSCSNLTMWVXXXXXXXXXXXLAFRSSLNPFQLPXXXXXXXXXXXXXXXTQIHCGLRELR 60
            MSCSNLTMWV           L+FRSSLNPFQLP                 I CGLRELR
Sbjct: 1203 MSCSNLTMWVSSKPSLSDSSLLSFRSSLNPFQLPSHNSPTASPSKSV----IQCGLRELR 1258

Query: 61   TRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDIDAP 120
             RIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQT+DID P
Sbjct: 1259 ERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDIDVP 1318

Query: 121  LTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVISVGKKGNSYF 180
            LTKVRPVKKVALVV TGDRGLCGGFNN            LKDLGL+YTVISVGKK + + 
Sbjct: 1319 LTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAESRIAELKDLGLDYTVISVGKKDDVFS 1378

Query: 181  LRR 183
            L R
Sbjct: 1379 LFR 1381


>GSVIVT01007868001 assembled CDS
          Length = 322

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 34/218 (15%)

Query: 59  LRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDID 118
           +R R+ SVKN QKIT+AMK+VAA+K+R  Q    N R   +    +L            D
Sbjct: 47  VRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTVLLG-----------D 95

Query: 119 APLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLK--DLGLNYTVISVGKKG 176
           +P      VKK  +V  + D+GLCGG N+                + G  Y V+  G+K 
Sbjct: 96  SPSVD---VKKNVIVTISSDKGLCGGINSTSVKISKALHKFTSGPEKGTKYVVL--GEKA 150

Query: 177 NSYFLRRPYIPVDRFL-EGTSLP-TAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVK 234
            +  +R     ++  + E    P    +   +AD++     + E D + +++ KF S++ 
Sbjct: 151 KAQLMRDSKKDIELCITELQKNPLNYTQVSVLADEILK---NVEYDALRIVFNKFRSIIS 207

Query: 235 SDPVIHTLLPLSPK---------GEICDINGNCVDAAE 263
             P   T+  LSP+         G++ D++   ++  E
Sbjct: 208 FVPTTSTV--LSPEVVEREAEAGGKLGDLDSYEIEGGE 243