Jatropha Genome Database

JcCA0254131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254131.20 + phase: 0 /partial
         (424 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038675001 assembled CDS                                        87   2e-17

>GSVIVT01038675001 assembled CDS
          Length = 807

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 166/380 (43%), Gaps = 62/380 (16%)

Query: 38  SPQLSLQSETLKVLEWSSLCDRLSYFTSTSMGNSVARNASIPIGKSLQESRKLLDQTAAA 97
           S + S+  +TL+VLEW  LC  +S F STS+G          + ++ QES +LLD+T AA
Sbjct: 21  SQKPSVHHQTLRVLEWDKLCHSVSSFASTSLGRESTWAQLWSLDQTYQESLRLLDETNAA 80

Query: 98  LAVMQSG--PLDFSEIEDVTGIVDSA---------VSGN-------LLTIGEXXXXXXXX 139
           L + + G   +DFS I+ V  +V SA         V GN       LL + E        
Sbjct: 81  LEIHKHGGCTMDFSTIDAV--LVKSAIQHARRMLPVDGNEAMAVVALLQLAETLQLNLKA 138

Query: 140 XXXXXXXXXXKDGGDCLERYGPLLEILQRCSFQIELEQKIGFCLDCNLSIILDRASEEL- 198
                     K+  D  +R+ P+ E++        L + I   +D + S+  D AS  L 
Sbjct: 139 AI--------KEDADWYKRFMPISEVIMGLVINRSLVKLIQQVVDEDGSVK-DSASSALK 189

Query: 199 ---EIIRSERKRNMENLDTLLKGI--STRIFQAGGADRPLVTKRRSRLCVGVRATHRHLI 253
              + +R+  ++  + +D+L++     T   +    D         R C+   A   +L 
Sbjct: 190 QSRDQVRTLERKLYQLMDSLVRNNVNETSSLEVSNVD--------GRWCIKSGANLTNL- 240

Query: 254 RNGVILDVSGSGATYFMEPDDAVELNNLEVMLSNSERAEEIVILSLLTSEIAQSEKEIKH 313
             G++L  SGSG    +EP  A+ LN+            E  +L  LT ++    ++I+ 
Sbjct: 241 -KGLLLS-SGSGVGSIIEPLSAIPLNDELQKARALAAKAEADVLLKLTEKMQMDLEDIEK 298

Query: 314 LLDGILKVDLAFSRAAYAQQMNAICP-ILTSEGCEGELSGGAH----------YPL---- 358
           LLD ++++D+  +RA Y       CP +  +E   G  S GAH          YP+    
Sbjct: 299 LLDSVIQLDVINARATYGLSFGGTCPDLFLAENKNGS-STGAHLSGHGTSEASYPIKREW 357

Query: 359 LIDIEGIRHPLLIGSSQRSL 378
            + +    HPLL+   + +L
Sbjct: 358 TLHLPKAYHPLLVQQHRENL 377