Jatropha Genome Database

JcCA0253471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0253471.10 + phase: 2 /partial
         (329 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031692001 assembled CDS                                        87   1e-17
GSVIVT01026026001 assembled CDS                                        86   3e-17
GSVIVT01026027001 assembled CDS                                        83   2e-16
GSVIVT01013538001 assembled CDS                                        76   2e-14
GSVIVT01013506001 assembled CDS                                        75   3e-14
GSVIVT01030585001 assembled CDS                                        72   5e-13

>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 114/259 (44%), Gaps = 40/259 (15%)

Query: 84  AYSLVLWNPSTRQ-REVLPNPKTFAPYNTFISHGLGYDSATNCYKVVQCGYYR------I 136
           A  +VLWNPSTRQ  ++ PNP      +    HG GYDS  + YKV             +
Sbjct: 121 ANKIVLWNPSTRQCNQLPPNPNVL---DFLGCHGFGYDSFADDYKVFLVSMLNPNFETVV 177

Query: 137 LVFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVA-ELENSSKIVVAFNLSDEKIVQL 195
            VFSL+S  W++ ++           T+ HGA HWVA +       ++AF+   E+  ++
Sbjct: 178 DVFSLKSNKWKRIQEKHHTRAARMCATVLHGALHWVAYDPILGFDTIMAFDFEKERFREM 237

Query: 196 QLPXXXXXXXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASW 255
            +P              +L V+ G LC+        +G   P     +WVMKEYGV  SW
Sbjct: 238 AIP------REEEELYVKLRVVGGCLCV--------HGSKDPS---KMWVMKEYGVDTSW 280

Query: 256 NKLITIAQERVYSVSAHF------CFKNDAVFIVNKSLWDISALLRYDLKNKELKTLKTF 309
           +K+ +       +++  F         N+ + +VNK       L+  D K    K +  +
Sbjct: 281 SKMASPYNSLRNNLNEEFRCELLHTLNNEHMLLVNK-----EKLMLCDQKENTYKNIMPY 335

Query: 310 EIEVPEMVS-YVESLVSPN 327
                   + YVE+LVSP+
Sbjct: 336 GRWFRHDANLYVETLVSPH 354


>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 38/258 (14%)

Query: 86  SLVLWNPSTRQREVLPNPKTFAPYNTFISHGLGYDSATNCYKVVQ---CGY-----YRIL 137
           ++ +WNPS ++ + LP+ K F      +S+  GYDS T+ YKVV+   C       Y + 
Sbjct: 5   TIFVWNPSIKESKRLPS-KPFEQLFYLVSYAFGYDSITDDYKVVRLVCCSINDSYEYHVE 63

Query: 138 VFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVAELE--NSSKIVVAFNLSDEKIVQL 195
           VFSL S +WRK + F + +   +AG   +G+ +W    +  N    + + +L+ E    +
Sbjct: 64  VFSLRSNAWRKIRSFPYFLFTDEAGKHVNGSINWAVSRDKNNDHWFIASLDLATESYEVV 123

Query: 196 QLPXXXXXXXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASW 255
             P               + VL G  C++    +I          +++WVM+EYGV  SW
Sbjct: 124 PQPDCANETLKPI-----IRVLGGQFCIIFEYDDI----------IDVWVMQEYGVKESW 168

Query: 256 NKLITI-----AQERVYSVSAHFCFKNDAVFIVNKSLWDISALLRYDLKNKELKTLKTFE 310
           +KL+T+       +  Y+    F  K  A+ I    +     L+ Y+    E  +   + 
Sbjct: 169 SKLVTVPFFSDPLDANYA-KPLFYLKEGAILIDFYGM-----LILYNFNRNESTSPMIYG 222

Query: 311 I-EVPEMVSYVESLVSPN 327
           +    E+  Y+ES+VSPN
Sbjct: 223 VHHYHEVEVYLESMVSPN 240


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 42/259 (16%)

Query: 87  LVLWNPSTRQREVLPNPKTFAPYNTFISHGLGYDSATNCYKVVQCG--------YYRILV 138
           + +WNPSTR+   LP P +F      +++G GYDS  + YKV + G         Y++ V
Sbjct: 118 IFVWNPSTREFRRLP-PISFMQCFHLVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQVRV 176

Query: 139 FSLESYSWRKPKDFGFDITFSQAGTLTHGA--FHWVAELENSSKIVVAFNLSDEKIVQLQ 196
           FSL    WRK ++F   +   + G   +G+  F  V + EN    VV  +L+ E    + 
Sbjct: 177 FSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDSENYYWSVVGLDLASESYRMVP 236

Query: 197 LPXXXXXXXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASWN 256
           LP               +  L G  C       I +  ++    +++WVM++YGV  SWN
Sbjct: 237 LPDCADPNVKPM-----IMALGGRFC------TIFDNDEA----VDVWVMEQYGVKKSWN 281

Query: 257 KLITIA----QERVYSVSAHFCFKNDAVFIVNKSLWDISALLRYDLKNKELKTL----KT 308
           KL+T+        V      F  ++ A+ +     + +  L   D     + T+      
Sbjct: 282 KLVTVPYFPDPMTVDCTKPVFFLRDGAILM---EFYGLLVLYNIDRDESTIPTIYGTRHC 338

Query: 309 FEIEVPEMVSYVESLVSPN 327
            E+EV     Y+E++VSPN
Sbjct: 339 HEVEV-----YLETIVSPN 352


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 105/236 (44%), Gaps = 46/236 (19%)

Query: 40  LEQQLPFLNGENCTILCSSDGLVLLRISIDKLNHRKTKAKVRADAYSLVLWNPSTRQREV 99
           LE  L   N    T+L S +GL+ +          K   K       L+LWNPSTRQ   
Sbjct: 75  LELHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYSLKPPQK-------LILWNPSTRQCNH 127

Query: 100 LPNPKTFAPYNTFISHGLGYDSATNCYKVVQCGYY------RILVFSLESYSWRKPKDFG 153
           +P P +F  Y   + +   YD  ++ YK+V+   +       I +F+L++  WR+ ++  
Sbjct: 128 IPCP-SFVGYQNCM-YSFFYDPGSDDYKIVRIFTFLGKDKTGIDIFTLKTNKWRRVEETH 185

Query: 154 FDITFSQAGTLTHGAFHWVA-------ELENSSKIVVAFNLSDEKIVQLQLPXXXXXXXX 206
             +    + T  +G  HW+A       E E SS  +VAF+L +EK  +++LP        
Sbjct: 186 SSVIGYWSATYFNGNLHWLAFRYGGYGEDERSS--MVAFSLREEKFQEMELPSQRAVFG- 242

Query: 207 XXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLN-IWVMKEYGVTASWNKLITI 261
                  L VL G LC+              G Y N  WVM+EYG+  SW  LI I
Sbjct: 243 -------LRVLGGCLCV-------------DGLYTNDKWVMEEYGIKESWKSLIAI 278


>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 126/289 (43%), Gaps = 44/289 (15%)

Query: 54  ILCSSDGLVLLRISIDKLNHRKTKAKVRADAYSL--VLWNPSTRQREVLP--NPKTFAPY 109
           I+ SS+GL+ L           T++  +    SL   LWNP+ R+ + LP  +   F   
Sbjct: 112 IVGSSNGLICL-----------TESNFKGSYLSLNLFLWNPAIREFQTLPKYHINNFTSP 160

Query: 110 NTFISHGLGYDSATNCYKVVQCGYY------RILVFSLESYSWRK-PKDFGFDITFSQAG 162
              +  G  +    N YKVV+  Y+         V+SL + SWRK   +    I  + + 
Sbjct: 161 LMVVGLGFAFHPVINDYKVVRIVYFMRNKTSEADVYSLRTGSWRKVDANICCYIHSNVSR 220

Query: 163 TLTHGAFHWVA----ELENSSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXELSVLQ 218
           T  +GA HW+A    E++N+  ++++F+++ +   ++ LP               L+  +
Sbjct: 221 TFINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKEIMLPDFGYDELIRKC----LADYK 276

Query: 219 GNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASWNKLITIAQERVYSVSAHFCFKND 278
           G+L +L       N         ++WVM+EYGV  SW K  TI  E    +   F    +
Sbjct: 277 GSLSVLFYDAYHSNEN------CDVWVMEEYGVAKSWTKHFTIRHEIEIIIPFEFFDNGE 330

Query: 279 AVFIVNKSLWDISALLRYDLKNKELKTLKTFEIEVP-EMVSYVESLVSP 326
           A+    KS   IS        N +    +   +  P  +V Y+ESLVSP
Sbjct: 331 AILQKKKSGGFISW-------NPDGIRFRDLGVSGPARLVEYMESLVSP 372


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 45/291 (15%)

Query: 54  ILCSSDGLVLLRISIDKLNHRKTKAKVRADAYSLVLWNPS-TRQREVLP----NPKTFAP 108
           I+ SS+GL+ L  S +K ++      V  D +   LWNPS T Q + LP    N    +P
Sbjct: 113 IVGSSNGLICLTESNNKGSY------VTVDTF---LWNPSVTAQWKPLPKYLINNMMTSP 163

Query: 109 YNTFISHGLGYDSATNCYKVVQCGY------YRILVFSLESYSWRK-PKDFGFDITFSQA 161
           +   +  G  +    + YKVV+  Y      Y + V+SL+  +W+         I  + +
Sbjct: 164 F-MVVGLGFAFHPQIDDYKVVRIVYFLKSKTYEVHVYSLKQDAWKNIDAKVHCHIHDTVS 222

Query: 162 GTLTHGAFHWVAELEN-----SSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXELSV 216
            T  +GA HW+A  +N     S  ++++F++ ++ + ++ LP               L+ 
Sbjct: 223 RTFVNGALHWLAAKKNQGRGKSDDLILSFDMVEDNLREMILPEFGYDESSTQKC---LAD 279

Query: 217 LQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASWNKLITIAQERVYSVSAHFCFK 276
            +G L +L    + CN         +IWVM EYGV +SW K  T   +    +   F   
Sbjct: 280 YKGLLSVLVYNAHRCNDN------CDIWVMDEYGVASSWTKRFTFCLDVEILILLDF-LD 332

Query: 277 NDAVFIVNKSLWDISALLRYDLKNKELKTLKTFEIEVPE-MVSYVESLVSP 326
           N  V + NK+      L+  D    +++ LK   +  P  +V Y+E+LVSP
Sbjct: 333 NGEVVVQNKN----GGLVACDPNGGKIRDLK---VAGPACLVKYIETLVSP 376