Jatropha Genome Database

JcCA0252741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0252741.10 - phase: 0 /pseudo/partial
         (314 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026027001 assembled CDS                                        84   7e-17
GSVIVT01026026001 assembled CDS                                        71   6e-13
GSVIVT01013506001 assembled CDS                                        67   1e-11
GSVIVT01030585001 assembled CDS                                        55   3e-08
GSVIVT01013538001 assembled CDS                                        50   1e-06

>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 29/226 (12%)

Query: 80  LWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVR-----ILQEMQREV 134
           +WNP T+ ++ L  P +S +   +     ++G GYD  ++DY+V R     I +  + +V
Sbjct: 120 VWNPSTREFRRL--PPISFMQCFHLV---AYGFGYDSIADDYKVTRVGCYCIGRYYEYQV 174

Query: 135 WIYSLRSNSWRKLDVW-CELSQGDMGVFVNGVLYFHGKNLE-----TIVAFDIATETFCT 188
            ++SLR N WRK++ + C L   + G+ VNG + F G         ++V  D+A+E++  
Sbjct: 175 RVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDSENYYWSVVGLDLASESYRM 234

Query: 189 IPLPECYIPQGFRHTRGLCVLEGKLCCCXYGENGVDIYVGDQHEDGLTWSKLTMITYKYN 248
           +PLP+C  P        +  L G+ C     +  VD++V +Q+    +W+KL  + Y  +
Sbjct: 235 VPLPDCADPNV---KPMIMALGGRFCTIFDNDEAVDVWVMEQYGVKKSWNKLVTVPYFPD 291

Query: 249 FLVT----PVFYSGEGDKILYIEENNEVVWYDFNRETHERFQTVPS 290
            +      PVF+  +G   + +E    +V Y+ +R+      T+P+
Sbjct: 292 PMTVDCTKPVFFLRDG--AILMEFYGLLVLYNIDRDE----STIPT 331


>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 25/215 (11%)

Query: 80  LWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRIL-----QEMQREV 134
           +WNP  K  K L       ++        S+  GYD  ++DY+VVR++        +  V
Sbjct: 8   VWNPSIKESKRLPSKPFEQLF-----YLVSYAFGYDSITDDYKVVRLVCCSINDSYEYHV 62

Query: 135 WIYSLRSNSWRKLDVWCE-LSQGDMGVFVNGVLYF---HGKNLET--IVAFDIATETFCT 188
            ++SLRSN+WRK+  +   L   + G  VNG + +     KN +   I + D+ATE++  
Sbjct: 63  EVFSLRSNAWRKIRSFPYFLFTDEAGKHVNGSINWAVSRDKNNDHWFIASLDLATESYEV 122

Query: 189 IPLPECYIPQGFRHTRGLCVLEGKLCCCXYGENGVDIYVGDQHEDGLTWSKLTMITYKYN 248
           +P P+C           + VL G+ C     ++ +D++V  ++    +WSKL  + +  +
Sbjct: 123 VPQPDC---ANETLKPIIRVLGGQFCIIFEYDDIIDVWVMQEYGVKESWSKLVTVPFFSD 179

Query: 249 FL----VTPVFYSGEGDKILYIEENNEVVWYDFNR 279
            L      P+FY  EG   + I+    ++ Y+FNR
Sbjct: 180 PLDANYAKPLFYLKEG--AILIDFYGMLILYNFNR 212


>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 26/279 (9%)

Query: 5   RSIETNSHKKLVLDGHAPTFPQLYALDFDDGLKQPVELDDPLKHSHGWFGYHIXXXXXXX 64
           R    NS+ +L+    + +  ++Y+L  +    +   L+ P+     +  Y I       
Sbjct: 62  RQASANSNGRLLFKHLSSSEQEIYSLRSNIAFAEVRRLEVPVPSKTDY--YQIVGSSNGL 119

Query: 65  XXXXXEN---TLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDY 121
                 N   +  ++ L LWNP  + ++ L  P   I   ++       G  +    NDY
Sbjct: 120 ICLTESNFKGSYLSLNLFLWNPAIREFQTL--PKYHINNFTSPLMVVGLGFAFHPVINDY 177

Query: 122 RVVRILQEMQR---EVWIYSLRSNSWRKLD--VWCELSQGDMGVFVNGVLY-FHGKNLET 175
           +VVRI+  M+    E  +YSLR+ SWRK+D  + C +       F+NG L+   GK  E 
Sbjct: 178 KVVRIVYFMRNKTSEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEM 237

Query: 176 ------IVAFDIATETFCTIPLPECYIPQGFRHTRGLCVLEGKLCCCXY----GENGVDI 225
                 I++FD+A + F  I LP+    +  R  + L   +G L    Y         D+
Sbjct: 238 DNTDNLILSFDMAKDVFKEIMLPDFGYDELIR--KCLADYKGSLSVLFYDAYHSNENCDV 295

Query: 226 YVGDQHEDGLTWSKLTMITYKYNFLVTPVFYSGEGDKIL 264
           +V +++    +W+K   I ++   ++ P  +   G+ IL
Sbjct: 296 WVMEEYGVAKSWTKHFTIRHEIEIII-PFEFFDNGEAIL 333


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 26/259 (10%)

Query: 2   HLNRSIETNSHKKLVLDGHAPTFPQLYALDFDDGLKQPVELDDPLKHSHGWFGYHIXXXX 61
           +L R+I T+++  ++L   + +  ++Y+L  D    +   L  P+     +  YHI    
Sbjct: 61  NLRRAI-THNNCCMLLKYLSSSEEEVYSLRCDKDFAEFRRLQVPVPSKTDY--YHIVGSS 117

Query: 62  XXXXXXXXEN---TLKTVKLGLWNP-FTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDT 117
                    N   +  TV   LWNP  T ++K L    ++ + +S +      G  +   
Sbjct: 118 NGLICLTESNNKGSYVTVDTFLWNPSVTAQWKPLPKYLINNMMTSPFMVV-GLGFAFHPQ 176

Query: 118 SNDYRVVRI---LQEMQREVWIYSLRSNSWRKLD--VWCELSQGDMGVFVNGVLYF---- 168
            +DY+VVRI   L+    EV +YSL+ ++W+ +D  V C +       FVNG L++    
Sbjct: 177 IDDYKVVRIVYFLKSKTYEVHVYSLKQDAWKNIDAKVHCHIHDTVSRTFVNGALHWLAAK 236

Query: 169 ----HGKNLETIVAFDIATETFCTIPLPECYIPQGFRHTRGLCVLEGKLCCCXYG----E 220
                GK+ + I++FD+  +    + LPE    +     + L   +G L    Y      
Sbjct: 237 KNQGRGKSDDLILSFDMVEDNLREMILPEFGYDESSTQ-KCLADYKGLLSVLVYNAHRCN 295

Query: 221 NGVDIYVGDQHEDGLTWSK 239
           +  DI+V D++    +W+K
Sbjct: 296 DNCDIWVMDEYGVASSWTK 314


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 32/185 (17%)

Query: 77  KLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQRE--- 133
           KL LWNP T++   +  P  S +    Y+ C  +   YD  S+DY++VRI   + ++   
Sbjct: 114 KLILWNPSTRQCNHI--PCPSFV---GYQNC-MYSFFYDPGSDDYKIVRIFTFLGKDKTG 167

Query: 134 VWIYSLRSNSWRKLDVWCELSQGDMG----VFVNGVLY--------FHGKNLETIVAFDI 181
           + I++L++N WR+++   E     +G     + NG L+        +      ++VAF +
Sbjct: 168 IDIFTLKTNKWRRVE---ETHSSVIGYWSATYFNGNLHWLAFRYGGYGEDERSSMVAFSL 224

Query: 182 ATETFCTIPLPECYIPQGFRHTRGLCVLEGKLCCCXYGENGVDIYVGDQHEDGLTWSKLT 241
             E F  + LP        R   GL VL G  C C  G    D +V +++    +W  L 
Sbjct: 225 REEKFQEMELPSQ------RAVFGLRVLGG--CLCVDGLYTNDKWVMEEYGIKESWKSLI 276

Query: 242 MITYK 246
            I Y+
Sbjct: 277 AIPYR 281