Jatropha Genome Database

JcCA0252151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0252151.10 - phase: 1 /partial
         (91 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034778001 assembled CDS                                       126   2e-30

>GSVIVT01034778001 assembled CDS
          Length = 403

 Score =  126 bits (316), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 63/72 (87%)

Query: 9   NRSASLQVVGGDSDCSDLKMGHVSVLVKGWTWIPDNLDNLYSCRCGLTCLWTKSAVLADK 68
           N S+SLQ V GD DC  L+M HV +LVKGWTWIPDNLDNLYSCRCGL+CLWTKS+VLADK
Sbjct: 83  NGSSSLQDVDGDLDCGVLQMRHVEILVKGWTWIPDNLDNLYSCRCGLSCLWTKSSVLADK 142

Query: 69  PDTLLFETTTPP 80
           PD LLFETTTPP
Sbjct: 143 PDALLFETTTPP 154