Jatropha Genome Database

JcCA0251901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251901.10 + phase: 0 
         (387 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025364001 assembled CDS                                       499   e-142
GSVIVT01033502001 assembled CDS                                       233   8e-62
GSVIVT01032803001 assembled CDS                                       208   3e-54
GSVIVT01024726001 assembled CDS                                       200   8e-52
GSVIVT01011171001 assembled CDS                                       195   2e-50
GSVIVT01024725001 assembled CDS                                       188   4e-48
GSVIVT01003874001 assembled CDS                                        92   4e-19

>GSVIVT01025364001 assembled CDS
          Length = 412

 Score =  499 bits (1286), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/362 (68%), Positives = 275/362 (75%), Gaps = 39/362 (10%)

Query: 1   MGAGGQKTAVLVSSKFKEMETNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXX 60
           MGAGG+ +             N  ++RVPHTKPPFTLGQIK+AIP HCF+RS+ R     
Sbjct: 45  MGAGGRLSV-----------PNSPVQRVPHTKPPFTLGQIKKAIPPHCFQRSIPRSFSYV 93

Query: 61  XXXXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQ 120
                       IA SYF LLPS ++Y+AWP+YWTLQGCTLTGVWVIAHECGHHAFSDYQ
Sbjct: 94  AYDLSLAFLFYYIATSYFSLLPSWLTYLAWPLYWTLQGCTLTGVWVIAHECGHHAFSDYQ 153

Query: 121 WVDDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPL 180
           W+DDTVGLILHSSLLVPYFSWKISHRRHHSNTGS+E   + +                  
Sbjct: 154 WLDDTVGLILHSSLLVPYFSWKISHRRHHSNTGSLEPLTLVI------------------ 195

Query: 181 GRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIFAAT 240
                      +GWPLYLAFNVSGRPYNRFACH+DP GPIYSDRERLQIYISD GIF A+
Sbjct: 196 --------TLTLGWPLYLAFNVSGRPYNRFACHYDPYGPIYSDRERLQIYISDAGIFTAS 247

Query: 241 YVLYQIAMAKGLAWLISIYGIPLLIVNAFLVTITYLQHTHPALPHYDSSEWDWLRGALST 300
           YVLY++ +AKGLAW++ +YGIPLLIVNAFLV ITYLQHTHP LPHYDS EWDWLRGAL+T
Sbjct: 248 YVLYRLILAKGLAWVVCMYGIPLLIVNAFLVLITYLQHTHPTLPHYDSLEWDWLRGALAT 307

Query: 301 VDRDYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQFDG--TPILMA 358
           VDRDYGVLNKVFHNITDTHV HHLFSTMPHYHAMEAT+AIKPILGEYYQFDG   PI   
Sbjct: 308 VDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATRAIKPILGEYYQFDGKLCPITYV 367

Query: 359 LW 360
            W
Sbjct: 368 GW 369


>GSVIVT01033502001 assembled CDS
          Length = 286

 Score =  233 bits (595), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 120/216 (55%), Positives = 140/216 (64%), Gaps = 38/216 (17%)

Query: 1   MGAGGQKTAVLVSSKFKEMETNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXX 60
           MGAGG+ +A   S+K  E +    ++R PH+KP FTL Q+K+AIP HCF+RS+L      
Sbjct: 25  MGAGGRMSAP-PSAKKSEADI---VQRAPHSKPQFTLSQLKKAIPPHCFQRSVLHSFSYV 80

Query: 61  XXXXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQ 120
                       IA +YFHLLP P+SY+AWPIYW  QGC LTGVWVIAHECGHHAFSDYQ
Sbjct: 81  ISDLTWASLLYYIATNYFHLLPHPLSYLAWPIYWAFQGCILTGVWVIAHECGHHAFSDYQ 140

Query: 121 WVDDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPL 180
           W+DDTVGLILHSSLLVPYFSWK SHRRHHSNTGS+E+DEVFVPK KS++ W         
Sbjct: 141 WLDDTVGLILHSSLLVPYFSWKYSHRRHHSNTGSLEKDEVFVPKTKSKLGW--------- 191

Query: 181 GRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDP 216
                                     Y+RFACHFDP
Sbjct: 192 -------------------------RYSRFACHFDP 202



 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 291 WDWLRGALSTVDRDYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQF 350
           W + R A      DYG+LNKVFH+ITDTHV HHLFST+PHYHAMEATKAIKP+LG+YYQF
Sbjct: 191 WRYSRFACHFDPHDYGILNKVFHHITDTHVAHHLFSTLPHYHAMEATKAIKPVLGDYYQF 250

Query: 351 DGTPILMALWREAKECLFVEPEEGGPNRGVLWYGNKY 387
           DGTP   A+WREAKEC++V+  +G  ++GV WY NK+
Sbjct: 251 DGTPFYKAMWREAKECVYVQ-SDGDKSKGVFWYQNKF 286


>GSVIVT01032803001 assembled CDS
          Length = 449

 Score =  208 bits (530), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/323 (37%), Positives = 169/323 (52%), Gaps = 18/323 (5%)

Query: 29  PHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXXXXXXXXXXXXXXIAASYFHLLPSPISYI 88
           P   PPF L +I+ AIP HC+ +   R                  AA + H       + 
Sbjct: 95  PGAPPPFRLAEIRAAIPKHCWMKDPWRSMSYVVRDVAVVFGLAAAAAYFNH-------WA 147

Query: 89  AWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSSLLVPYFSWKISHRRH 148
            WP+YW  QG     ++V+ H+CGH +FS    ++  VG +LHSS+LVPY  W+ISHR H
Sbjct: 148 VWPLYWFAQGTMFWALFVLGHDCGHGSFSSNPKLNSVVGHLLHSSILVPYHGWRISHRTH 207

Query: 149 HSNTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXXXXXVGWPLYLAFNVSGRPYN 208
           H N G +E DE + P    +I    + L+              + +PLYL     GR   
Sbjct: 208 HQNHGHVENDESWHP-LSEKI---YRSLDTATRTLRFTLPFPMLAYPLYLW----GRSPG 259

Query: 209 RFACHFDPSGPIYSDRERLQIYISDIGIFAATYVLYQIAMAKGLAWLISIYGIPLLIVNA 268
           +   HFDP+  ++   ER  +  S +   A   +L  ++   G   ++ +YGIP  I   
Sbjct: 260 KTGSHFDPNSDLFIPNERKDVITSTVCWSAMAALLVCLSFVMGPVQMLKLYGIPYWIFVM 319

Query: 269 FLVTITYLQH--THPALPHYDSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVTHHLFS 326
           +L  +TYL H      LP Y   EW +LRG L+T+DRDYGV+N + H+I  THV HHLF 
Sbjct: 320 WLDLVTYLHHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGVINNIHHDI-GTHVIHHLFP 378

Query: 327 TMPHYHAMEATKAIKPILGEYYQ 349
            +PHYH +EATKA KP+LG+YY+
Sbjct: 379 QIPHYHLVEATKAAKPVLGKYYR 401


>GSVIVT01024726001 assembled CDS
          Length = 446

 Score =  200 bits (509), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 168/323 (52%), Gaps = 18/323 (5%)

Query: 29  PHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXXXXXXXXXXXXXXIAASYFHLLPSPISYI 88
           P   PPF L +++  IP HC+ +   +                 IAA Y         ++
Sbjct: 90  PSAPPPFRLAEVRAVIPKHCWVKDPWKSMSYVFRDFIVIFGLA-IAAIYLD------RWV 142

Query: 89  AWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSSLLVPYFSWKISHRRH 148
            WP+YW  QG     ++V+ H+CGH +FSD   ++  VG +LHS++LVPY  W+ISHR H
Sbjct: 143 VWPLYWAAQGTMFWALFVLGHDCGHGSFSDNPMLNSMVGHLLHSTILVPYNGWRISHRTH 202

Query: 149 HSNTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXXXXXVGWPLYLAFNVSGRPYN 208
           H N G +E DE +VP F  ++    + L+                +PLYL +   G+   
Sbjct: 203 HQNQGHVENDESWVP-FPEKL---YRSLDAKTRTLRFTLPFPMFAYPLYLWYRSPGKE-- 256

Query: 209 RFACHFDPSGPIYSDRERLQIYISDIGIFAATYVLYQIAMAKGLAWLISIYGIPLLIVNA 268
               HF+P   ++   ER  +  S +       +L  ++   G   ++ +YG+P  +   
Sbjct: 257 --GSHFNPYSDMFPISERKAVLTSTVCWSIMVALLLVLSFVAGPVQVLKLYGVPYWVFIM 314

Query: 269 FLVTITYLQH--THPALPHYDSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVTHHLFS 326
           +L  +TYLQH      LP Y   EW +LRG L+TVDRDYG  N + HN T THV HHLF 
Sbjct: 315 WLDFVTYLQHHGYEQKLPWYRGKEWSYLRGGLTTVDRDYGWFNSIQHN-TGTHVIHHLFP 373

Query: 327 TMPHYHAMEATKAIKPILGEYYQ 349
            +PHYH +EAT+A KP+LG+YY+
Sbjct: 374 QIPHYHLIEATEAAKPVLGKYYR 396


>GSVIVT01011171001 assembled CDS
          Length = 439

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 180/354 (50%), Gaps = 21/354 (5%)

Query: 1   MGAGGQKTAVLVSSKFKEMETN---RRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXX 57
           +G   ++   L  S    +E N    + +  P   PPF L  I+ AIP HC+ +   R  
Sbjct: 54  IGCSKERNWALKVSAPLRVEVNGVEEQPEFDPGAPPPFKLADIRAAIPKHCWVKDPWRSM 113

Query: 58  XXXXXXXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFS 117
                           AA+Y +      +++ WP+YW  QG     ++V+ H+CGH +FS
Sbjct: 114 SYVVRDVVVVCGLA-AAAAYLN------NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFS 166

Query: 118 DYQWVDDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLN 177
           +   ++  VG +LHSS+LVPY  W+ISHR HH N G +E DE + P    RI    + L+
Sbjct: 167 NNPTLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP-LPERI---YKNLD 222

Query: 178 NPLGRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIF 237
                         + +P YL     G+       HFDPS  ++   ER  +  S I   
Sbjct: 223 VVTRMLRFTVPFPMLAYPFYLWSRSPGKT----GSHFDPSSDLFVPSERKNVITSTICWT 278

Query: 238 AATYVLYQIAMAKGLAWLISIYGIPLLIVNAFLVTITYLQH--THPALPHYDSSEWDWLR 295
           A   +L  ++   G   ++ +YG+P  I   +L  +TYL H      LP Y   EW +LR
Sbjct: 279 AMAALLVGLSFVMGPIQMLKLYGVPYWIFVMWLDFVTYLHHHGHDDKLPWYRGKEWSYLR 338

Query: 296 GALSTVDRDYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQ 349
           G L+T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct: 339 GGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 391


>GSVIVT01024725001 assembled CDS
          Length = 329

 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 149/266 (56%), Gaps = 11/266 (4%)

Query: 86  SYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSSLLVPYFSWKISH 145
           S++ WP+YW  QG     ++V+ H+CGH +FSD   ++  VG +LHS +LVPY  W+ISH
Sbjct: 23  SWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSDNPKLNSIVGHLLHSWILVPYHGWRISH 82

Query: 146 RRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXXXXXVGWPLYLAFNVSGR 205
           R HH N G +E DE +VP  +       + L+N               +P+YL     G+
Sbjct: 83  RTHHQNHGHVENDESWVPLPEKMY----KNLDNSTRIFRFTVPFPIFAYPMYLWHRSPGK 138

Query: 206 PYNRFACHFDPSGPIYSDRERLQIYISDIGIFAATYVLYQIAMAKGLAWLISIYGIPLLI 265
                  HF+P+  ++   ER  +  S +       +L  ++   GL  ++ +YG+P L+
Sbjct: 139 K----GSHFNPNSDLFPTSERKAVLTSTLCWCMMVALLVCVSFVVGLPQVLKLYGVPYLV 194

Query: 266 VNAFLVTITYLQH--THPALPHYDSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVTHH 323
              +L  +TYL H      LP Y   EW +LRG L+TVDRDYG  N + H+I  THV HH
Sbjct: 195 FVMWLDFVTYLHHHGYEQKLPWYRGKEWSYLRGGLTTVDRDYGWFNNIHHDI-GTHVIHH 253

Query: 324 LFSTMPHYHAMEATKAIKPILGEYYQ 349
           LF  +PHYH +EATKA +P+LG+YY+
Sbjct: 254 LFPQIPHYHLIEATKAARPVLGKYYR 279


>GSVIVT01003874001 assembled CDS
          Length = 441

 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 29/284 (10%)

Query: 73  IAASYFHLLPSPISYIAW---PIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGLI 129
           I+A+ + L    IS   W   P+ W   G  +TG +VI H+C H +FS  + ++D VG +
Sbjct: 126 ISATSYALGLFMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSRNKLLEDIVGTL 185

Query: 130 LHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXXX 189
               L+ PY  W+  H RHH+ T  +  D  + P  K       ++ ++P  R       
Sbjct: 186 AFLPLIYPYEPWRFKHDRHHAKTNMLSEDTAWHPVLK------EEFDSSPTLRKAIIYGY 239

Query: 190 XXVGWPLYLAFNVSGRPYNRFA----CHFDPSGPIYSDRERLQIYISDIGIFAATYVLYQ 245
             +            RP+   A     HFD +   Y   E  ++ IS   +FA   + + 
Sbjct: 240 GPI------------RPWMSIAHWLIWHFDLNK--YRPNEIKRVKISLACVFAFMAIGWP 285

Query: 246 IAMAK-GLAWLISIYGIPLLIVNAFLVTITYLQHTHPALPHYDSSEWDWLRGALS-TVDR 303
           + + K G+   I  + +P L  + ++ T T + HT P +P   S EW+  +  L+ TV  
Sbjct: 286 LIIYKTGVMGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKSSDEWNAAQAQLNGTVHC 345

Query: 304 DYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEY 347
           DY    ++  +  + H+ HH+   +P Y+   A ++++   G+Y
Sbjct: 346 DYPRWIEILCHYINVHIPHHISPRIPSYNLRAAHQSLQENWGKY 389