Jatropha Genome Database

JcCA0251661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251661.10 - phase: 1 /partial
         (179 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016716001 assembled CDS                                       197   3e-51

>GSVIVT01016716001 assembled CDS
          Length = 1011

 Score =  197 bits (500), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 135/174 (77%), Gaps = 1/174 (0%)

Query: 6   PVMSGVGSPASVSNISVPLNANSPSVGTPPMADQTMLERLSKIEMVTIRHQLNSKKNKVD 65
           P    VGSPASV N+S P NANSPSV TPP ADQTML++ SKIE+V +RHQLN KKNKV+
Sbjct: 639 PKAPAVGSPASVGNMSGPSNANSPSVATPPSADQTMLDKFSKIEIVVMRHQLNCKKNKVE 698

Query: 66  DFPVRKPNTYSHQNVMACLSNLPNNEDLKDDASARQLFKSVVGGSMNVLKIRIINFLLAD 125
           D PV+KP T+S Q ++  LS   +NED+KDD     L KS+ GGSMNV K+R++NF+ A+
Sbjct: 699 DCPVKKP-TFSPQELLGRLSMASHNEDIKDDTCKMPLSKSLAGGSMNVCKLRVLNFVQAE 757

Query: 126 RVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLPNT 179
           RV+QG+ VS VPR+R+ MI+SEK NDG+VA+H+G+  DGD LS EDY+ +LPNT
Sbjct: 758 RVVQGSVVSVVPRARSTMIMSEKANDGSVAVHHGDVVDGDFLSAEDYVSTLPNT 811