Jatropha Genome Database

JcCA0251221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251221.10 - phase: 1 /pseudo/partial
         (239 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035957001 assembled CDS                                       315   1e-86
GSVIVT01007958001 assembled CDS                                       259   9e-70
GSVIVT01022808001 assembled CDS                                       228   2e-60
GSVIVT01003875001 assembled CDS                                       228   3e-60

>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score =  315 bits (806), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/189 (83%), Positives = 171/189 (90%)

Query: 34   KHLMCSPWMPGLHIYNSSLLGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPE 93
            K +M +    G  + + +  GSAIGFRLDSLLKLTDTRARNNKMTLM+YLCKVL+EKLPE
Sbjct: 1349 KRIMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMNYLCKVLAEKLPE 1408

Query: 94   LLDFPKDLMNLEAATKIQLKYLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEF 153
            LLDFPKDL++LEA+TKIQLKYLAEEMQAISKGLEKVVQELTASENDG VSE+FCK LKEF
Sbjct: 1409 LLDFPKDLLHLEASTKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSENFCKTLKEF 1468

Query: 154  LSSAESEVRSLALLYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFSRAHEENC 213
            L  AE+EVRSLA LYS VGRNADALALYFGEDPARCPFEQVVSTLLNFVRMF+RAHEENC
Sbjct: 1469 LVFAEAEVRSLASLYSGVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFTRAHEENC 1528

Query: 214  KQLEFERKK 222
            KQLEFERKK
Sbjct: 1529 KQLEFERKK 1537


>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score =  259 bits (661), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 143/169 (84%)

Query: 54  GSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFPKDLMNLEAATKIQLK 113
           GSA+GF+LDSLLKLTDTRA N+KMTLMHYLCKVL+ K P LLDF +DL++LEAA+KIQLK
Sbjct: 821 GSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLASKSPGLLDFHEDLVSLEAASKIQLK 880

Query: 114 YLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEFLSSAESEVRSLALLYSTVGR 173
            LAEEMQAI KGLEKV QEL ASENDG VS+ F K LKEF+  AE +V S+  LYS VGR
Sbjct: 881 SLAEEMQAIMKGLEKVKQELNASENDGPVSDIFRKTLKEFIGVAEGQVGSVTNLYSVVGR 940

Query: 174 NADALALYFGEDPARCPFEQVVSTLLNFVRMFSRAHEENCKQLEFERKK 222
           NADALALYFGEDP RCPFEQV  TLLNF+R+F +AHEENCKQ E ERKK
Sbjct: 941 NADALALYFGEDPVRCPFEQVTVTLLNFIRLFRKAHEENCKQAELERKK 989


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 144/169 (85%)

Query: 54   GSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFPKDLMNLEAATKIQLK 113
            G+AIGF+LDSLLKL DTRARNNKMTLMHYLCK+LSEKL ELLDF KDL++LEAA+KIQLK
Sbjct: 877  GAAIGFKLDSLLKLADTRARNNKMTLMHYLCKLLSEKLSELLDFDKDLVHLEAASKIQLK 936

Query: 114  YLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEFLSSAESEVRSLALLYSTVGR 173
             LAEEMQA+SKGLEKV QELTAS NDG +S  F K+LK FL +AE+EVRSL  LYS VGR
Sbjct: 937  SLAEEMQAVSKGLEKVEQELTASVNDGAISAGFQKVLKNFLDTAEAEVRSLISLYSEVGR 996

Query: 174  NADALALYFGEDPARCPFEQVVSTLLNFVRMFSRAHEENCKQLEFERKK 222
            NAD+L+ YFGEDPARCPFEQV   L+ F++ F+++ ++N KQ + E+KK
Sbjct: 997  NADSLSQYFGEDPARCPFEQVTQILVVFIKTFNKSRDDNEKQADAEKKK 1045


>GSVIVT01003875001 assembled CDS
          Length = 947

 Score =  228 bits (580), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 124/138 (89%)

Query: 54  GSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFPKDLMNLEAATKIQLK 113
           GSAIGFRLDSLLK+ DTRARN K TLMHYLCKVL++KLPE+LDF KDL +LE A+KIQLK
Sbjct: 810 GSAIGFRLDSLLKIADTRARNKKTTLMHYLCKVLADKLPEVLDFSKDLASLEPASKIQLK 869

Query: 114 YLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEFLSSAESEVRSLALLYSTVGR 173
           +LAEEMQAISKGLEKV+QEL++SENDG +SE+FCK LK+FL  AE+EVRSLA LYS VGR
Sbjct: 870 FLAEEMQAISKGLEKVMQELSSSENDGPISENFCKTLKKFLHFAETEVRSLASLYSGVGR 929

Query: 174 NADALALYFGEDPARCPF 191
           N DAL LYFGEDPARCPF
Sbjct: 930 NVDALILYFGEDPARCPF 947