Jatropha Genome Database

JcCA0250521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0250521.10 + phase: 0 
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010325001 assembled CDS                                       236   2e-63

>GSVIVT01010325001 assembled CDS
          Length = 207

 Score =  236 bits (601), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/118 (94%), Positives = 113/118 (95%)

Query: 1   MSKVTNEVLERWNFSIETDSEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEA 60
           MSK TNEVLERWNFSIETD EVVE GVSREKSDKEIMREIQAIMRQIASSITYLPC+DE 
Sbjct: 89  MSKATNEVLERWNFSIETDGEVVENGVSREKSDKEIMREIQAIMRQIASSITYLPCIDEP 148

Query: 61  CVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDE 118
           CVFDVLAYTD DVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDE
Sbjct: 149 CVFDVLAYTDTDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDE 206