Jatropha Genome Database

JcCA0249841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0249841.10 + phase: 0 /partial
         (292 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023897001 assembled CDS                                       424   e-119
GSVIVT01034063001 assembled CDS                                       204   3e-53
GSVIVT01016434001 assembled CDS                                       202   1e-52
GSVIVT01015369001 assembled CDS                                       153   1e-37
GSVIVT01026930001 assembled CDS                                       149   1e-36
GSVIVT01036908001 assembled CDS                                       134   5e-32
GSVIVT01017070001 assembled CDS                                       131   4e-31

>GSVIVT01023897001 assembled CDS
          Length = 587

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/279 (77%), Positives = 236/279 (84%), Gaps = 11/279 (3%)

Query: 25  FLCNHNQSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQK 84
           +L    ++GK CLGDIIYRY+TAEQF PECLLDCLDLS+EHHTLE+ANRIEAAVHVWKQK
Sbjct: 309 YLETLPKNGKACLGDIIYRYITAEQFSPECLLDCLDLSSEHHTLEIANRIEAAVHVWKQK 368

Query: 85  EQKKPTNNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNK 144
           + KK   + K K S+WG KVKGLVADT+KN F+A RAETLL SLRLRFPGLPQTALDMNK
Sbjct: 369 DWKKQPKHLKAKRSTWGGKVKGLVADTEKNQFLAIRAETLLHSLRLRFPGLPQTALDMNK 428

Query: 145 IQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLGGL 204
           IQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDDA KRCAAAESM+LF R GLGGL
Sbjct: 429 IQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAVKRCAAAESMALFGRGGLGGL 488

Query: 205 PIQKRMSPSPFSIQHSPFASPFATPTFCSSTPVAGSPARAPSSLNRNNVK---------- 254
           PIQKRMSPSPFSIQHSPFASPFATPTFCSSTP+ GSP R P S N+ + K          
Sbjct: 489 PIQKRMSPSPFSIQHSPFASPFATPTFCSSTPLTGSPGRTPPSRNKMSSKGAPELKLEKP 548

Query: 255 -EAIDQKLEKPYAADFEKVWSYTGNLSSRRVSGDAPERD 292
             A + KLEKP  ADFEK+WSYTGNLS+R+VSGDAPERD
Sbjct: 549 IPAPEMKLEKPIPADFEKMWSYTGNLSARKVSGDAPERD 587


>GSVIVT01034063001 assembled CDS
          Length = 1231

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 147/219 (67%), Gaps = 10/219 (4%)

Query: 31   QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
            ++GK+ LGD+I+RY+T++QF PE LL CLDLS+EH  LE+ANR+EA+V+VW++K   KP 
Sbjct: 944  KNGKSSLGDLIHRYVTSDQFSPEYLLACLDLSSEHQALEIANRVEASVYVWRRKTNSKPI 1003

Query: 91   NNTKVKHSS--WGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYN 148
            +NT    S   W + VK L+ D  K   +A RAE+LL  ++ RFPGLPQT LDM+KIQYN
Sbjct: 1004 SNTSRSTSRSSWEI-VKDLMVDADKRELLAERAESLLHCMKQRFPGLPQTTLDMSKIQYN 1062

Query: 149  KDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLGGLPIQK 208
            KDVG+SILESYSRV+ESLA NI+ARIDDVL+VDD +K      S+S        G+ I  
Sbjct: 1063 KDVGKSILESYSRVLESLASNIVARIDDVLYVDDLTKHSDQLLSISKVGVMAHKGVSI-- 1120

Query: 209  RMSPSPFSIQHSPFASPFATPTFCSSTPVAGSPARAPSS 247
               P    + ++P+ + F TP+F     V  SPA    S
Sbjct: 1121 ---PYSVPVPNTPYKTAFTTPSFSPGQLV--SPANGDRS 1154



 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 145/240 (60%), Gaps = 20/240 (8%)

Query: 34  KTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPTN-- 91
           +  LGD+IYRY+T++QF PEC+L  LD ++E   LEVANR+EA++ VW Q+   KP +  
Sbjct: 391 RASLGDLIYRYITSDQFSPECVLSHLDFTSEQ-ALEVANRVEASIIVWHQRHYPKPVSIK 449

Query: 92  NTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKDV 151
           +      SW  + K L+AD  K   +A RAE+LL  ++ RFPGLPQT L+M+K+Q+NKD+
Sbjct: 450 SQPTSRQSWKAE-KELMADADKTESIAERAESLLFCIKQRFPGLPQTTLEMSKVQFNKDI 508

Query: 152 GQSILESYSRVMESLAFNIMARIDDVLFVDDASKR--------CAAAESMSLFNRNGLGG 203
           G+SILESYSRV+ESLA +I+ R+DD+L++DD + +          A ES+S+     +  
Sbjct: 509 GKSILESYSRVLESLAADILVRVDDLLYMDDLTNQFLPITRVGVTAHESISIPYLLPVSS 568

Query: 204 LPIQKRMSPSPFS-----IQHSPFASPFATPTFCSSTPVAGSPARAPSSLNRNNVKEAID 258
            PI+  ++ S  S     I      SPF  P   S   + G   R PS+  +N  ++  D
Sbjct: 569 TPIETAVTTSGVSQGQQVIPAKAETSPFFKP---SKLLLRGLSKRKPSTDFQNTERKGKD 625


>GSVIVT01016434001 assembled CDS
          Length = 814

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/222 (50%), Positives = 147/222 (66%), Gaps = 10/222 (4%)

Query: 25  FLCNHNQSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQK 84
           FL    ++G+ CLGDIIYRY+T++QF  ECLLDCLDLS+EH  LE+ANR+EA+++VW+++
Sbjct: 306 FLEALPKNGRACLGDIIYRYITSDQFSSECLLDCLDLSSEHVALEIANRVEASIYVWRRR 365

Query: 85  EQKKP-TN-NTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDM 142
              KP TN N     SSW + VK L+ D  K   +A RAE+L  SL+ RFPGL QT LD 
Sbjct: 366 THHKPMTNPNRSTAKSSWEM-VKDLMVDGDKRELLAERAESLFLSLKQRFPGLTQTTLDT 424

Query: 143 NKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLG 202
           +KIQ NKDVG+SILESYSRV+ESLAFNI+ARIDD+L+VDD +K+     S+   +     
Sbjct: 425 SKIQCNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLNKQSDKHSSVPTVS----- 479

Query: 203 GLPIQKRMSPSPFSIQHSPFASPFATPTFCSSTPVAGSPARA 244
            +   KR+S  P+S+  S      A  T   S     SPAR 
Sbjct: 480 -VIAHKRVS-IPYSVPVSSTPQKTALTTLSRSPAPLISPARG 519


>GSVIVT01015369001 assembled CDS
          Length = 536

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 108/162 (66%), Gaps = 11/162 (6%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           ++G+  LGD IY+ +T E F PE LL  +DLST+H  LE  N+IEA++ +WK+K      
Sbjct: 306 KNGRASLGDSIYKSITVEFFDPEQLLSTMDLSTDHKVLEFKNKIEASIVIWKRK------ 359

Query: 91  NNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKD 150
            N K   S+WG  V       +K      RAET+L  L+ RFPGL Q+ LD +KIQ+N+D
Sbjct: 360 MNHKDGKSTWGSAVS-----LEKRELFEERAETILLLLKQRFPGLAQSQLDTSKIQFNRD 414

Query: 151 VGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAES 192
           VGQSILESYSR++ESLAF +M+RI+DV++ D  ++  + A++
Sbjct: 415 VGQSILESYSRILESLAFTVMSRIEDVMYADSLAQNPSLAQT 456


>GSVIVT01026930001 assembled CDS
          Length = 495

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 119/163 (73%), Gaps = 16/163 (9%)

Query: 31  QSGKTCLGDIIYRYL-TAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKP 89
           +SG+  LGD IYR++ T+++F P+ L+D L +S+EH  LE+A+R+EA+++ W++K     
Sbjct: 325 KSGRAGLGDAIYRFMNTSDKFSPDQLMDYLHISSEHEALELADRVEASMYTWRRK----- 379

Query: 90  TNNTKVKHS--SWGVKVKGLVADTK---KNHFMAHRAETLLQSLRLRFPGLPQTALDMNK 144
                V HS  SW + VK L+++T+   KN+ +A RAE+LL  L+ R+P L QT+LD  K
Sbjct: 380 ---ACVAHSKSSWDM-VKQLISETERTDKNYVLAERAESLLFCLKQRYPELSQTSLDACK 435

Query: 145 IQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRC 187
           IQYNKDVGQ+ILESYSRV+ESLAF+I+A I+DVL  +D + RC
Sbjct: 436 IQYNKDVGQAILESYSRVLESLAFSIVAWIEDVLH-EDRNMRC 477


>GSVIVT01036908001 assembled CDS
          Length = 912

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 7/191 (3%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           +SGK  LG+ +YR LTAE    E +L  L+L +EH  LE  NR+EAAV  WK++  ++ +
Sbjct: 324 KSGKANLGEELYRVLTAESSSAEEMLSSLNLKSEHSALEAINRLEAAVFAWKERITEQVS 383

Query: 91  NNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKD 150
             + V+ +SW   +K    +  K   +  RAE LLQ LR R+P LPQ+ LD+ KIQY KD
Sbjct: 384 GKSPVR-TSWSF-IKDPTTELDKMELILFRAEALLQQLRTRYPNLPQSFLDVAKIQYGKD 441

Query: 151 VGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLGGLPIQKRM 210
           +G SILE+YSRV+ +LA +I+ R+ D+L  D  S   +   + S F    L G+      
Sbjct: 442 IGHSILEAYSRVLGNLASSILCRMRDILQEDVFSNPNSPIATTSCFPGINLTGM----TE 497

Query: 211 SPSP-FSIQHS 220
           +P+P   I+HS
Sbjct: 498 TPTPSLRIRHS 508


>GSVIVT01017070001 assembled CDS
          Length = 434

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 95/148 (64%), Gaps = 11/148 (7%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           ++G+  LGD IY+ +T + F P   L  +DLS+    L++ NRIEA++ +WK+K   K  
Sbjct: 202 KNGRASLGDSIYKSITVDHFDPGQFLSTMDLSSNRKILDLKNRIEASIVIWKRKMHNKDG 261

Query: 91  NNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKD 150
                  S+W   V       +K      RAET+L  ++ R+PGL Q+ LD+NKIQ+N+D
Sbjct: 262 ------KSAWASAVS-----LEKRELFEERAETILLIIKQRYPGLDQSQLDINKIQFNQD 310

Query: 151 VGQSILESYSRVMESLAFNIMARIDDVL 178
           VG +ILESYSR++E+LAF +++RI+DVL
Sbjct: 311 VGHAILESYSRILETLAFTVLSRIEDVL 338