Jatropha Genome Database

JcCA0249491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0249491.10 - phase: 1 /pseudo/partial
         (435 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019608001 assembled CDS                                       508   e-144

>GSVIVT01019608001 assembled CDS
          Length = 724

 Score =  508 bits (1309), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/419 (61%), Positives = 299/419 (71%), Gaps = 13/419 (3%)

Query: 24  RQLVSVFRALIGVTRSLGGVYMYSNHRGCDGGRLYYDGCSCVVVNGEVVALGSQFSLKXX 83
           R+L    +A IG T ++GGVYMYSN +GCDGGRLYYDGCSC+VVNG +VA GSQFSLK  
Sbjct: 206 RKLDLRVQAFIGATHTIGGVYMYSNQQGCDGGRLYYDGCSCIVVNGNMVAQGSQFSLKDV 265

Query: 84  XXXXXXXXXXXXXXKRGSSSSFLEEPSG-KTRIPSLAVPYKLCQTFNLKMPISNPIKMTP 142
                          RGS SSF E+ S  + ++ S+AVP  LCQ FNLKM +S P+K+  
Sbjct: 266 EVVVAQVDLDAVASFRGSISSFQEQASSSRPKVSSVAVPVSLCQPFNLKMSLSGPLKVKY 325

Query: 143 CSPEEEIASGPACWLWDYLRRSEASGFLLPLSGAVNSSAVAAIVGSMCQLVVKEIANGDE 202
             PEEEIA GP+CWLWDYLRRS ASGFLLPLSG  +SS+VAAIVG MCQLVVKEIA GDE
Sbjct: 326 HLPEEEIAFGPSCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAEGDE 385

Query: 203 QVKADAIRIGCYTDEQFPTDSKEFAKRIFYTVFMESENSSEAMKQQAKAMADDIGSRHXX 262
           QVKADAIRIG YTD QFPTDSKEFAKRIFYTVFM SENSSEA +++AK +A++IGS H  
Sbjct: 386 QVKADAIRIGQYTDGQFPTDSKEFAKRIFYTVFMGSENSSEATRKRAKVLAEEIGSWHLD 445

Query: 263 XXXXXXXXXXXXXFQTVTGKKPRNKVDGGSDAENRGLKNIQARTRMTLASTLASLLPWVH 322
                        FQT+TGK+PR KVDGGS+ EN GL+NIQAR RM LA  LASL+PWVH
Sbjct: 446 ICIDGVITALLSLFQTLTGKRPRYKVDGGSNIENLGLQNIQARIRMVLAFMLASLMPWVH 505

Query: 323 NKSGXXXXXXXXXXDEQLSGQLTKYGCSSGDINPIGSFNKKDIQAFLRWAATNLGYSSLA 382
           NK+G          DE L G LTKY CSS DINPIG  +K+D++ FL+WAA +LGY SLA
Sbjct: 506 NKAGFYLVLGSANVDEALRGYLTKYDCSSADINPIGGISKQDLRGFLQWAAVHLGYPSLA 565

Query: 383 KVEAAS------------QNLDAKEIVMTSEELSVLGKWRKTFRCGPVSMFQNLCHKWG 429
           ++EAA               LD  ++ MT EELSV G+ RK F CGPVSMF+NLC+KWG
Sbjct: 566 EIEAAPPTAELEPIRANYSQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYKWG 624