Jatropha Genome Database

JcCA0247261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247261.10 + phase: 0 /pseudo/partial
         (642 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019747001 assembled CDS                                       150   2e-36
GSVIVT01026934001 assembled CDS                                       113   3e-25
GSVIVT01025600001 assembled CDS                                        71   1e-12
GSVIVT01028483001 assembled CDS                                        67   4e-11
GSVIVT01024972001 assembled CDS                                        50   4e-06

>GSVIVT01019747001 assembled CDS
          Length = 867

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 192/652 (29%), Positives = 284/652 (43%), Gaps = 96/652 (14%)

Query: 53  VSIEQEIKKKITTAKVENVQSDSELVDDRSRNHRKAPKSQ-RSRRLPIYGCYDVSTVDHG 111
           +S  Q IKK+I   KV ++Q   E V   S++ +KA K   R+R +P++G  +++   H 
Sbjct: 56  MSSGQCIKKQIAPIKVGHLQP--EFVGLSSKSQKKASKDHPRARDIPVHGWKNLAGSRHE 113

Query: 112 EIPHQNLAGSDRSSKSIDSVVSAEVQVHTNENCMHHERPNEINLQVNM-NEATEAFINQK 170
            +   N      + KS+                  H++ NE+NL +   +EA EAF+NQK
Sbjct: 114 RLTQPNRGHGVGNKKSVTG--------------SKHDQFNEVNLLLAQKSEAAEAFVNQK 159

Query: 171 LIDGKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKHIEDLRDSQTKKLQ 230
           L  GK+L  DGA+H+SK FLDAL++LNSNK+LF+KLL+DPNSLLVKHI+DLRDSQT K  
Sbjct: 160 LFVGKYLSKDGANHRSKQFLDALEVLNSNKELFLKLLEDPNSLLVKHIQDLRDSQTGKEP 219

Query: 231 NKSFARGGLSECQTRN---------TRKC------NLLME-----------TGDFQPLEK 264
            KS +    SEC   N         TRK       NL  +           + + QP   
Sbjct: 220 AKSLSGDRRSECGLSNAKQQEGAEHTRKSQKKNGHNLFWKKIKWDRYSSKGSSNHQPSHT 279

Query: 265 IVVFRPSSKSLQNHADRTSNDSPQIH-YSLRSVHQSVKPIRFPFKQMKRTLMHAIGVSRK 323
           I V +P     QN   RT     Q H Y LR   Q+ +          R+  HA+  +RK
Sbjct: 280 IEVSKPCLTRAQNFESRTRLFPSQQHQYGLRDGSQNGR---------SRS-EHAMVENRK 329

Query: 324 EQQL-LTDNLLHDKSVHGFEGGQCSKEAVAGSIKGLSPNE-ASSDFERMTKSSMDVNRKD 381
           EQ     D+ L     +   G +   + + G I G S +  A  D     KSS D+ R+ 
Sbjct: 330 EQHCNPMDDALCKPPYYDLRGSEFVGKWIGGKIVGRSSSSSAKLDIGNTAKSSTDIKRRK 389

Query: 382 QRDKLGQFDSVVRDEVXXXXXXXXXXXXXXTIRHPKRNEHFVNIETE------FKNENAN 435
              K   F   ++ E                 ++ K+ E  +  E +        NE+ +
Sbjct: 390 NIGKPKDFGLSIQHETGSTSGSGSKSLKISAAKYSKQKESSIYAEAKRHLSEMLSNEDKD 449

Query: 436 --LPKKQKVKSYDVISSLLEYDLFPEVSRRTRKPE-VVSQQMRFSSYYSRHTVNEDNWRS 492
                KQ +     I SL  YDL  ++S R       V+ +MRFS Y +     ++    
Sbjct: 450 EFFSTKQVLGPLGTILSLPGYDLSSKLSPRWETEHGFVTAEMRFSPYSNFQADLQNRQLL 509

Query: 493 QEEK-ENSCSSPVRQNVEAVCGTQMQK--HEMRRKISSNPFP----DDKEQQSISSLNND 545
           Q+EK + S  SP+ QN E      ++K   +++   S   FP    D K  +SI S+ +D
Sbjct: 510 QKEKNKTSHPSPLGQNPEDPPCANIKKPIDQLQVPDSKTNFPHLLSDAKLHESICSIRDD 569

Query: 546 MSHIEKTCGEKSEEIAXXXXXXXXXXXXNNCVNQSI-----------KTVDGC---EENG 591
            S           ++             +NC+ + +           +  D     EEN 
Sbjct: 570 SSW--------EGDVNILKTHDTIHLGESNCLERPLGLSSRPETRSKRCTDATSVREENE 621

Query: 592 SLNFSREDSPVKNQXXXXXXXXXXXXPLNN-QRFGAFDMIKQNTEQTSPVSV 642
            L FS  D  +++Q            P ++ Q     + IK   +QTSPVSV
Sbjct: 622 YLEFSGPDVLLEDQSQTFSLGVPPSSPSSSVQETEDLEGIKHRADQTSPVSV 673


>GSVIVT01026934001 assembled CDS
          Length = 897

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 181/374 (48%), Gaps = 47/374 (12%)

Query: 29  DGANKKSAMVDSGYGRVKKITGEDVSIEQEIKKKITTAKVENVQSDSELVDDRSRNHRKA 88
           DG   +    DS    +KK+  E++S E+E+KK++T+ +VE  QSD E  D   +N R+ 
Sbjct: 74  DGDECQMVTADSCKPSMKKLIEEEMSNEEEVKKQMTSDEVEPKQSDPEKGDPIRKNRRRI 133

Query: 89  PKSQRSRRLPIYGCYDVSTVDHGEIPHQNLAGSDRSSKSIDSVVSAEV-QVH-TNENCMH 146
            KS+++  + I+     +    G + + N      SS  +D+++     Q+H  +  C  
Sbjct: 134 NKSKKTCNVHIH-----NNAGSGNLSNYNSEQQFMSSLDLDAIMEELCGQIHQKSSTCGR 188

Query: 147 HERPNEINLQVN---------MNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKILN 197
           H+   E N+Q +         ++EAT+ FI+QK   G     DG +  S+ F DAL+ LN
Sbjct: 189 HDHHGEHNMQPDKRCPASEEKLSEATKVFISQKFATGT--AEDGKTENSQEFTDALQTLN 246

Query: 198 SNKDLFIKLLQDPNSLLVKHIEDLRDSQTKKL-QNKSFARGGLSECQTRNTRKCNLLMET 256
           SNK+LF+KLLQDPNSLL+KHI++L DSQ   L Q+K F      +   R ++  + +   
Sbjct: 247 SNKELFLKLLQDPNSLLMKHIQNLLDSQLLNLKQSKEFTNHKQHKFFRRRSKSQDSISLN 306

Query: 257 G--DFQPLEKIVVFRPSSKSLQN-HADRTSNDSPQIHYSLRSVHQSVKPI-RFPFKQMKR 312
           G  ++Q   KIV+ +P     +N   D       Q H  + +   S + +  F   ++KR
Sbjct: 307 GNENYQASNKIVILKPGPVDSRNSETDNGFGSLMQSHNDMTNTGPSERTVSHFSLNEIKR 366

Query: 313 TLMHAIGVSRKEQQLLTDNLLHDKSVHGFEGGQCSKEAVAGSIKGLSPNEASSDFERMTK 372
            L HA+G   +E+Q    N                     G+I   SPN +    ER+ K
Sbjct: 367 RLKHAMG---RERQGTAHN---------------------GNIGMHSPNRSHFYTERIPK 402

Query: 373 SSMDVNRKDQRDKL 386
            S    R D+  KL
Sbjct: 403 PSAGSKRGDKIGKL 416


>GSVIVT01025600001 assembled CDS
          Length = 867

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query: 159 MNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKHI 218
           + EA +AFI QK +D K L  D     S+ F DAL++L+SNKDL +K LQ+P+SL  KH+
Sbjct: 111 LTEAEKAFIRQKFMDAKRLSTDEKLQDSQEFHDALEVLDSNKDLLLKFLQEPDSLFTKHL 170

Query: 219 EDLR 222
           +DL+
Sbjct: 171 QDLQ 174


>GSVIVT01028483001 assembled CDS
          Length = 809

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query: 158 NMNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKH 217
           N NE   A + QK  + K L  D    QSK F DAL++L+SN+DLF+K LQ+PNSL  +H
Sbjct: 164 NANEKKMALVRQKFNEAKSLATDEKLRQSKEFQDALEVLSSNRDLFLKFLQEPNSLFTQH 223

Query: 218 IEDLR 222
           + +L+
Sbjct: 224 LYELQ 228


>GSVIVT01024972001 assembled CDS
          Length = 911

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 4/126 (3%)

Query: 162 ATEAFINQKLIDGKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKHIEDL 221
           A +A + Q ++D   L  D + HQ K  +D L++L  NK+LF+K+LQDP+  +      L
Sbjct: 192 ARKASVYQNIMDSDQLNRDISGHQLKECVDVLELLRINKELFVKILQDPDVGIANRFHSL 251

Query: 222 R--DSQTKKLQNKSFARGGLSECQTRNTRKCNLLMETGDFQPLEKIVVFRPSSKSLQNHA 279
           +  +SQ K  ++ SF    L+  + RN +      +  +     K     PS+++ +  A
Sbjct: 252 QTSNSQIKLTKSGSFPTADLA--RRRNFKPSKFEHKQNEIWSFPKREKLLPSAQAPKLVA 309

Query: 280 DRTSND 285
            ++S D
Sbjct: 310 SKSSKD 315