Jatropha Genome Database

JcCA0247191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247191.10 + phase: 1 /partial
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015824001 assembled CDS                                       239   2e-64
GSVIVT01015821001 assembled CDS                                       221   7e-59

>GSVIVT01015824001 assembled CDS
          Length = 522

 Score =  239 bits (611), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 116/118 (98%)

Query: 19  VKLVWYYNNALGRPNKKKFIARAKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH 78
           VKLVWYYNNALGRPNKKKFIAR KSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH
Sbjct: 180 VKLVWYYNNALGRPNKKKFIAREKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH 239

Query: 79  YWRYHLPGETEEEFSSRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPASYFEK 136
           YWRYHLPGE+EEEFS+RLA NLE+LILKEGPETIAAFIAEPVMGAGGVIPPPA+YF+K
Sbjct: 240 YWRYHLPGESEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDK 297


>GSVIVT01015821001 assembled CDS
          Length = 493

 Score =  221 bits (563), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 109/118 (92%)

Query: 19  VKLVWYYNNALGRPNKKKFIARAKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH 78
           VKLVWYYNNALGRPNKKKFIA  KSYHG+T ISASLSGLP LHQ FDLP+PFV HTDCPH
Sbjct: 149 VKLVWYYNNALGRPNKKKFIALEKSYHGTTFISASLSGLPVLHQGFDLPSPFVFHTDCPH 208

Query: 79  YWRYHLPGETEEEFSSRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPASYFEK 136
           YWR+HLPGETEEEFS+RLA NLE LILK+GPETIAAFIAEP+MGAGGVIPPP +Y+EK
Sbjct: 209 YWRFHLPGETEEEFSTRLANNLEKLILKQGPETIAAFIAEPLMGAGGVIPPPTTYYEK 266