Jatropha Genome Database

JcCA0246931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246931.20 + phase: 0 /TE
         (478 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015124001 assembled CDS                                       191   5e-49
GSVIVT01037631001 assembled CDS                                       190   1e-48
GSVIVT01034745001 assembled CDS                                       189   2e-48
GSVIVT01011363001 assembled CDS                                       179   2e-45
GSVIVT01038695001 assembled CDS                                       102   3e-22
GSVIVT01028612001 assembled CDS                                        90   2e-18
GSVIVT01000436001 assembled CDS                                        79   4e-15
GSVIVT01036343001 assembled CDS                                        57   1e-08
GSVIVT01020881001 assembled CDS                                        55   9e-08

>GSVIVT01015124001 assembled CDS
          Length = 780

 Score =  191 bits (486), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 137/206 (66%)

Query: 1   MASSSMSLSPPHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHE 60
           + +S  +L+PP F+G NY VWAV+M AY     LW+ V E     PL+ NPT+ QI+ H 
Sbjct: 3   LEASLNALTPPMFDGINYQVWAVRMEAYLDASDLWEAVSEEYEVPPLSDNPTIAQIKLHN 62

Query: 61  EEVAKAPKALSYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEF 120
           E   +  K  + ++A V+  IFT+IMT +T +E W  LK +Y G E+ + MQV NL +EF
Sbjct: 63  ERRQRKSKVKASLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREF 122

Query: 121 EMLKMKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTW 180
           EM +MK++E +KDY D+++ IVN++RLLG +      V+K+ +T+ EKFE  ISSL+++ 
Sbjct: 123 EMQRMKESETIKDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSK 182

Query: 181 DMSQISLNVLSNALQAVEQRKAYREE 206
           D+S I+L  L NALQA EQR+  R+E
Sbjct: 183 DVSSITLAELLNALQAQEQRRLMRQE 208


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 154/234 (65%), Gaps = 5/234 (2%)

Query: 1   MASSSMSLSPPHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHE 60
           +  SS++++    +G+NY  WAV+M  + + L +W+ VEEN    PL  NPT+ Q++ H+
Sbjct: 720 LEESSLTVALSILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHK 779

Query: 61  EEVAKAPKALSYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEF 120
           E   +  KA + ++AAV+  IF KIM  ++A E WE LK +Y G E+ + MQV NL +EF
Sbjct: 780 ERRTRKAKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREF 839

Query: 121 EMLKMKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTW 180
           EM KM++++ VKDY  +++ I +++RLLG+E   +  V+K++VTLPEK+EA ISSL+++ 
Sbjct: 840 EMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSK 899

Query: 181 DMSQISLNVLSNALQAVEQRKAYREEEIFGEKALVVTQQPKMKKNFRKIGGRTD 234
           D+S ISL  L ++L+AVEQR+  R+ +   E A     Q +M+KN     G+ +
Sbjct: 900 DLSTISLTELLHSLEAVEQRRLMRQGDT-AEGAF----QARMQKNAGHKNGKVN 948


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 135/195 (69%)

Query: 13  FNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHEEEVAKAPKALSY 72
           FNGE+YH+WAVKMR Y +  GLW  V       PL  NPT+ Q++ +EEE  K  KA++ 
Sbjct: 14  FNGEHYHIWAVKMRFYLRSQGLWNVVMSEADPPPLGANPTVAQMKAYEEEKLKKDKAITC 73

Query: 73  IYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEFEMLKMKDNEKVK 132
           +++ + D IFTKIM  ET    W+KL+ ++ G E+ + +++  L++EFE++KMKD+E VK
Sbjct: 74  LHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKMKDDEFVK 133

Query: 133 DYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTWDMSQISLNVLSN 192
           DY  R+M +VNQIRLLGE   ++  VEK+MV +P+KFEAKIS+++++ D+  +++  L++
Sbjct: 134 DYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEAKISAIEESCDLQTLTIVELTS 193

Query: 193 ALQAVEQRKAYREEE 207
            L A EQR   R +E
Sbjct: 194 KLHAQEQRVLMRGDE 208


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score =  179 bits (455), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 127/186 (68%)

Query: 1   MASSSMSLSPPHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHE 60
           M  SS++++P   +G+NY  WAV+M  + + L +W+ VEEN    PL  NPT+ Q++ H+
Sbjct: 1   MEESSLTVAPSILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHK 60

Query: 61  EEVAKAPKALSYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEF 120
           E   +  KA + ++AAV+  IF KIM  ++A E WE LK +Y G E+ + MQV NL +EF
Sbjct: 61  ERRTRKAKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREF 120

Query: 121 EMLKMKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTW 180
           EM KM++++ VKDY  +++ I +++RLLG+E   +  V+K++VTLPEK+EA ISSL+++ 
Sbjct: 121 EMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSK 180

Query: 181 DMSQIS 186
           D+   S
Sbjct: 181 DLRYAS 186


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 5/124 (4%)

Query: 111 MQVFNLRKEFEMLKMKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFE 170
           MQV NL +EFEM KM++++ VKDY  +++ I +++RLLG+E   +  V+K++VTLPEK+E
Sbjct: 1   MQVMNLIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYE 60

Query: 171 AKISSLDDTWDMSQISLNVLSNALQAVEQRKAYREEEIFGEKALVVTQQPKMKKNFRKIG 230
           A ISSL+++ D+S ISL  L ++L+AVEQR+  R+ +   E A     Q +M+KN     
Sbjct: 61  AIISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDT-AEGAF----QARMQKNAGHKN 115

Query: 231 GRTD 234
           G+ +
Sbjct: 116 GKVN 119


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 1   MASSSMSLSPPHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHE 60
           M SS +  +   F+G  Y  WA+ M  + +    W  V     ++  +   T  Q +  E
Sbjct: 27  MLSSFVQPAISKFDG-YYDHWAMLMENFLRSKEYWGLVVNGVPAVAEDAVLTDAQRKHIE 85

Query: 61  EEVAKAPKALSYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEF 120
           ++  K  KA +Y++ A+   I   I+  +T  + W+ +K K+ G  + ++  +  LRKEF
Sbjct: 86  DQQLKDLKAKNYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEF 145

Query: 121 EMLKMKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTW 180
           ++L MK  E V +Y  R + I N++++ GE+      VEK++ ++  KF+  + S++++ 
Sbjct: 146 KILHMKSGETVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESK 205

Query: 181 DMSQISLNVLSNALQAVEQR-KAYREEEIFGEKALVVTQ 218
           D+  ++++ L ++L   EQR  ++  EE   E+AL VT 
Sbjct: 206 DLDTLTIDELQSSLLVHEQRMTSHVLEE---EQALKVTH 241


>GSVIVT01000436001 assembled CDS
          Length = 95

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%)

Query: 11 PHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHEEEVAKAPKAL 70
          P FNGE+YH+W  KMR Y +  GLW  V       PL  NPT+ Q++ +EEE  K  KA+
Sbjct: 12 PVFNGEHYHIWVDKMRFYLRSQGLWNVVMFEADPPPLGANPTVAQMKAYEEEKLKKDKAI 71

Query: 71 SYIYAAVADPIFTKIMTCETA 91
          + +++ + D IFTKIM  ET 
Sbjct: 72 TCLHSGLVDHIFTKIMDLETP 92


>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 10  PPHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLN-----QNPTLQQIRQHEEEVA 64
           P   + +N+ +W  +M       G   ++E  R   P        NP     R+++  + 
Sbjct: 130 PIKLDRDNHILWHTQMENVIYANGFEDHIEGLRPCPPKTISTGEVNPDFLVWRRYDRMI- 188

Query: 65  KAPKALSYIYAAVADPIFTKIMTCETAHEAWEKLKIKYHGYEKTRQMQVFNLRKEFEMLK 124
                LS+IY+++   +  +I+  +T+HEAW  L+  +    K R MQ   LR  F+  K
Sbjct: 189 -----LSWIYSSLTPDVMGQIVGLQTSHEAWTALQRSFSASTKARTMQ---LRLAFQTNK 240

Query: 125 MKDNEKVKDYVDRIMKIVNQIRLLGEELEEKGFVEKVMVTLPEKFEAKISSLDDTWDMSQ 184
            K +  + +Y+ ++  I + +  +GE + EK  + +++  L  ++   I+SL    D   
Sbjct: 241 -KGSLTMMEYIQKLKHISDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIASLTTRDD--D 297

Query: 185 ISLNVLSNALQAVEQR 200
           I L+ + + L   EQR
Sbjct: 298 IQLHAVHSILLTHEQR 313


>GSVIVT01020881001 assembled CDS
          Length = 645

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 11  PHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHEEEVAKAPKAL 70
           P F G  Y +W+ KMR  F    LW+ V+   +   +++N  ++ +R+      K  KAL
Sbjct: 10  PCFQGSGYDIWSSKMRTLFISEDLWELVDMGYIEEEISKN-AIRDVRK------KDAKAL 62

Query: 71  SYIYAAVADPIFTKIMTCETAHEAWEKLKIKY 102
             I  A+A+ IF +I     + EAW+ L+I+Y
Sbjct: 63  FLIQQAIAENIFPQISKATKSKEAWDALQIEY 94