Jatropha Genome Database

JcCA0245241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0245241.10 + phase: 0 /partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010618001 assembled CDS                                       406   e-114

>GSVIVT01010618001 assembled CDS
          Length = 303

 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/250 (80%), Positives = 218/250 (87%), Gaps = 2/250 (0%)

Query: 2   AALSCYFQFTINRSSQKVKSKPFIYCSTQ-PVQSNIKVVVNGAAKEIGRAAVIAVSKARG 60
           AALS  F  T  RS + VK+K  + CS Q P QSNIKVV+NGAAKEIGRAAV+AV+KARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAVDTHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQ-SKETGVVIDFTDPSTV 119
           MEVAGAVD+H VGEDIG +C MEE LE+PIINDLTMVLGSISQ SK TGVV+DFTDPSTV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMKSIVYVPRIKLDTIAALSALCDKASMGCLVAPTLSIGSILLQQAAISA 179
           Y+NVKQATAFGM S+VYVPRIKLDT+ ALSA C+KASMGCLVAPTLSIGSILLQQAAISA
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISA 182

Query: 180 SFHYNNVEIVESRAQAADLPSADAFQIAKNLSNLGQIYNREDSSTDVLARGQVLGEDGVR 239
           SFHYNNVEIVESR    D PS DA QIA NLSNLGQIYNRED STD+LARGQVLGEDG+R
Sbjct: 183 SFHYNNVEIVESRPTPTDFPSPDAIQIANNLSNLGQIYNREDISTDILARGQVLGEDGIR 242

Query: 240 VHSLVLPGLP 249
           VHSLVLPGLP
Sbjct: 243 VHSLVLPGLP 252