Jatropha Genome Database

JcCA0242131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0242131.10 + phase: 1 /TE/partial
         (474 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018265001 assembled CDS                                       214   6e-56
GSVIVT01008074001 assembled CDS                                       202   2e-52
GSVIVT01001052001 assembled CDS                                       199   2e-51
GSVIVT01032599001 assembled CDS                                       199   2e-51
GSVIVT01029244001 assembled CDS                                       196   2e-50
GSVIVT01016862001 assembled CDS                                       195   5e-50
GSVIVT01016652001 assembled CDS                                       181   7e-46
GSVIVT01019734001 assembled CDS                                       150   9e-37
GSVIVT01035525001 assembled CDS                                        95   9e-20

>GSVIVT01018265001 assembled CDS
          Length = 958

 Score =  214 bits (545), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 117/184 (63%), Positives = 124/184 (67%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVE T+HVGHFQ
Sbjct: 183 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVETTTHVGHFQ 242

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 243 K--------------------------VLTAIG-----NFC------------------- 252

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA GM +EI+VIYG+QER YRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 253 ----ICSIAFGMAIEIVVIYGLQEREYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 308

Query: 358 LSQQ 361
           LSQQ
Sbjct: 309 LSQQ 312


>GSVIVT01008074001 assembled CDS
          Length = 956

 Score =  202 bits (515), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 122/184 (66%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGESLPVTK PGDG+YSGSTCKQGEIEAVVIATGVHTFFGKAAHLV+ T+ VGHFQ
Sbjct: 182 QSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQ 241

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 242 K--------------------------VLTAIG-----NFC------------------- 251

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA+GM++EIIV+Y IQ+R YR GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 252 ----ICSIAVGMIIEIIVMYPIQDRDYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 307

Query: 358 LSQQ 361
           LSQQ
Sbjct: 308 LSQQ 311


>GSVIVT01001052001 assembled CDS
          Length = 952

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 123/184 (66%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGESLPVTKNPGD V+SGSTCKQGEIEAVVIATGVHTFFGKAAHLV++T+ VGHFQ
Sbjct: 181 QSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQ 240

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 241 K--------------------------VLTAIG-----NFC------------------- 250

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA+GMLVEI+V+Y IQ+R YR GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 251 ----ICSIAVGMLVEIVVMYPIQQRKYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 306

Query: 358 LSQQ 361
           LS+Q
Sbjct: 307 LSEQ 310


>GSVIVT01032599001 assembled CDS
          Length = 955

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 121/184 (65%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGESLPVTK PGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV+ T+ VGHFQ
Sbjct: 182 QSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQ 241

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 242 K--------------------------VLTAIG-----NFC------------------- 251

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA+GM++EIIV++ IQ R YR GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 252 ----ICSIAVGMVIEIIVMFPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 307

Query: 358 LSQQ 361
           LSQQ
Sbjct: 308 LSQQ 311


>GSVIVT01029244001 assembled CDS
          Length = 954

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 121/184 (65%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGESLPVTK+P D V+SGSTCKQGEIEAVVIATGVHTFFGKAAHLV++T+ VGHFQ
Sbjct: 183 QSALTGESLPVTKHPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQ 242

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 243 K--------------------------VLTAIG-----NFC------------------- 252

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA+GMLVEIIV+Y IQ R YR GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 253 ----ICSIAVGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 308

Query: 358 LSQQ 361
           LSQQ
Sbjct: 309 LSQQ 312


>GSVIVT01016862001 assembled CDS
          Length = 952

 Score =  195 bits (495), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 108/184 (58%), Positives = 122/184 (66%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           Q+ALTGESLPVT+NPGD V+SGSTCKQGEIEAVVIATGVHTFFGKAAHLV+NT+H GHFQ
Sbjct: 181 QAALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNHQGHFQ 240

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 241 K--------------------------VLTAIG-----NFC------------------- 250

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIALG++VEI+V+Y IQ R YR GI+NLLVLLIGGIPIAMPTVLSVTMAIGSHR
Sbjct: 251 ----ICSIALGIIVEIVVMYPIQRRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHR 306

Query: 358 LSQQ 361
           LS+Q
Sbjct: 307 LSKQ 310


>GSVIVT01016652001 assembled CDS
          Length = 970

 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 118/184 (64%), Gaps = 54/184 (29%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGESLPVTK  GD V+SGSTCK GEIEAVVIATGVH+FFGKAAHLV++T  +GHFQ
Sbjct: 186 QSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEVIGHFQ 245

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           K                          V+T +      N+C                   
Sbjct: 246 K--------------------------VLTSIG-----NFC------------------- 255

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA+GM++EIIV++ IQ R YR GI+NLLVLLIGGIPIAMPTVLSVT+AIGSHR
Sbjct: 256 ----ICSIAVGMILEIIVMFPIQHRSYRNGINNLLVLLIGGIPIAMPTVLSVTLAIGSHR 311

Query: 358 LSQQ 361
           LSQQ
Sbjct: 312 LSQQ 315


>GSVIVT01019734001 assembled CDS
          Length = 1462

 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 116/206 (56%), Gaps = 54/206 (26%)

Query: 178 QSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTSHVGHFQ 237
           QSALTGES P+TK+ G+GVYSGSTC QGE EAVV ATGVHTFFGKAAHLVE ++HVGH+Q
Sbjct: 776 QSALTGESFPLTKHTGEGVYSGSTCMQGETEAVVTATGVHTFFGKAAHLVETSTHVGHYQ 835

Query: 238 KVFFVSPPMIIRLKEMKIFVSCITYKNVMTKLSVVXKXNYCDVTSLLIKFIXWFQVLTSI 297
           +V  V                                 N+C                   
Sbjct: 836 QVLTVIG-------------------------------NFC------------------- 845

Query: 298 GNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 357
               ICSIA+GML+EII+IY +Q R Y  GI NL+VLLIGGIPIA+P V+S+ M++G   
Sbjct: 846 ----ICSIAIGMLIEIIIIYWVQHRHYHSGIGNLVVLLIGGIPIAIPAVVSLIMSVGFRH 901

Query: 358 LSQQVCGLSALALIGLTKKMILECGN 383
           L+QQ      +A I     M + C N
Sbjct: 902 LTQQGVITKRMAAIEDMAGMDVLCSN 927


>GSVIVT01035525001 assembled CDS
          Length = 862

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 293 VLTSIGNFCICSIALGMLVEIIVIYGIQERGYRVGIDNLLVLLIGGIPIAMPT 345
           VLT+IGNFCICSIA+GM++EIIV+Y IQ R YR GIDNLLVLLIGGIPIAMPT
Sbjct: 168 VLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPT 220