Jatropha Genome Database

JcCA0241941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0241941.10 + phase: 1 /TE/partial
         (929 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009548001 assembled CDS                                        65   1e-10

>GSVIVT01009548001 assembled CDS
          Length = 849

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%)

Query: 691 FRMGNAKAISCPLTNHFKLSSKQCPSTDGEKEEKEKVLXASAVGNLMYAMVCTLPDIAHS 750
           F M   K     +    KL ++ CP  D EK+  + +  ASA+G+LMYA  C  P+I   
Sbjct: 558 FNMHTCKDGDVLVVKGDKLGNEHCPKNDLEKDAMKAIPYASAIGSLMYAQACIRPNIVFI 617

Query: 751 VGVVSQFLSNLGKEYWTAVKWIFR 774
           V V+ ++LSNLG+ +W A K + R
Sbjct: 618 VNVLGRYLSNLGQYHWVAAKKVMR 641