Jatropha Genome Database

JcCA0241461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0241461.10 + phase: 0 /partial
         (275 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015254001 assembled CDS                                       331   3e-91
GSVIVT01013293001 assembled CDS                                       216   7e-57
GSVIVT01013821001 assembled CDS                                       178   2e-45
GSVIVT01004706001 assembled CDS                                       178   3e-45
GSVIVT01006160001 assembled CDS                                       140   5e-34
GSVIVT01023072001 assembled CDS                                        92   3e-19

>GSVIVT01015254001 assembled CDS
          Length = 517

 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/275 (62%), Positives = 191/275 (69%), Gaps = 54/275 (19%)

Query: 1   MEDQQDATALKHPFSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLEL 60
           + D      +K  FSDR  IR+I++RPDGG GL GQ V++GGWVKTGREQGKGSFAFLEL
Sbjct: 17  LNDDVSTPFVKAQFSDRHLIRTILSRPDGGAGLAGQTVKVGGWVKTGREQGKGSFAFLEL 76

Query: 61  NDGSCSANLQVIVEKEVADLSPLVHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPV 120
           NDGSC ANLQVIV+  VA L  LV TG CV VEG+LK PPEGTKQ++ELRVEKV HVGPV
Sbjct: 77  NDGSCPANLQVIVDAAVAPLGQLVQTGTCVHVEGLLKVPPEGTKQRVELRVEKVHHVGPV 136

Query: 121 DPAKYPIPKTKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPI 180
           DPAKYP+PKT+LTLEFLRD +HFRPRTNTISAVARIRNALA+ATH+FFQ HGFLY+HTPI
Sbjct: 137 DPAKYPLPKTRLTLEFLRDFVHFRPRTNTISAVARIRNALAYATHTFFQNHGFLYIHTPI 196

Query: 181 ITTSDCEGAGEMFQVTTXXXXXXXXXXXXXQNPPPSEAEIEAAKLVVKERGEAVAQLXXX 240
           ITTSDCEGAGEMFQVTT                  S+AE                     
Sbjct: 197 ITTSDCEGAGEMFQVTTLI----------------SDAE--------------------- 219

Query: 241 XXXXXXXXXXXXXLTTAKENVSRLVERSKLKPGIP 275
                            KEN+SRL ERSKLKPGIP
Sbjct: 220 -----------------KENLSRLEERSKLKPGIP 237


>GSVIVT01013293001 assembled CDS
          Length = 354

 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 105/147 (71%), Positives = 117/147 (79%)

Query: 51  GKGSFAFLELNDGSCSANLQVIVEKEVADLSPLVHTGACVSVEGVLKEPPEGTKQKIELR 110
            KG  A LELNDGS  ANLQVIV+  +  L  LV    CV VE  LK PPEGTKQ++E R
Sbjct: 25  SKGLLASLELNDGSYPANLQVIVDAALVPLGQLVQISTCVHVESSLKVPPEGTKQRVEFR 84

Query: 111 VEKVLHVGPVDPAKYPIPKTKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQE 170
           VEKV HVGPVDPAKYP+PKT+LTL+FLR  +HFR RTN I AVARI NALA+ATH+FFQ 
Sbjct: 85  VEKVHHVGPVDPAKYPLPKTRLTLKFLRVFVHFRSRTNMIPAVARICNALAYATHTFFQN 144

Query: 171 HGFLYVHTPIITTSDCEGAGEMFQVTT 197
           HGFL+ HTPIITTSDCEGAGEMF+VTT
Sbjct: 145 HGFLHAHTPIITTSDCEGAGEMFRVTT 171


>GSVIVT01013821001 assembled CDS
          Length = 496

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 92/110 (83%)

Query: 88  ACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPKTKLTLEFLRDRIHFRPRT 147
           +C      LK PPEGTKQ++E RVEKV HVGPVDPAKYP+PKT+LTLEFLR  +HFR RT
Sbjct: 117 SCRKARSSLKVPPEGTKQRVEFRVEKVHHVGPVDPAKYPLPKTRLTLEFLRVFVHFRSRT 176

Query: 148 NTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAGEMFQVTT 197
           N I AVARI NALA+ATH+FF  HGFL+ HTPIITTSDCEGAGEMFQVTT
Sbjct: 177 NMIPAVARICNALAYATHTFFLNHGFLHAHTPIITTSDCEGAGEMFQVTT 226


>GSVIVT01004706001 assembled CDS
          Length = 584

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 126/188 (67%), Gaps = 8/188 (4%)

Query: 14  FSDRVPIRSIVNRPDGGTGLCGQRVRIGGWVKTGREQGKGSFAFLELNDGSCSANLQVIV 73
           F  R+ +  I   PD G    GQ + + GWV+T R Q   S  F+E+NDGSC +N+Q ++
Sbjct: 105 FRKRLRVVDIKGGPDEGLDRLGQTLAVKGWVRTLRVQS--SVIFIEVNDGSCLSNMQCVM 162

Query: 74  EKEVADLSPL----VHTGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPK 129
             +      +    + TGA VS++G L    +G+KQK+EL+V K++ VG  DP+ +PI K
Sbjct: 163 NSDADGYDQVESGSITTGASVSIQGTLV-ASQGSKQKVELKVLKIVTVGKSDPS-FPIQK 220

Query: 130 TKLTLEFLRDRIHFRPRTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGA 189
            +++ EFLR + H RPRTNT  AVAR+RNALA+ATH FFQE+GF+++ +PIIT SDCEGA
Sbjct: 221 KRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCEGA 280

Query: 190 GEMFQVTT 197
           GE F VTT
Sbjct: 281 GEQFCVTT 288


>GSVIVT01006160001 assembled CDS
          Length = 434

 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 11/193 (5%)

Query: 86  TGACVSVEGVLKEPPEGTKQKIELRVEKVLHVGPVDPAKYPIPKTKLTLEFLRDRIHFRP 145
           TG C+  EGVLK PP   K  IEL+ EK+LH+G VD  KYP+ K +L ++ LRD  HF+P
Sbjct: 3   TGTCILAEGVLKLPPVEGKHAIELQAEKILHIGTVDREKYPLSKKRLPIDSLRDFSHFKP 62

Query: 146 RTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAGEMFQVTTXXXXXXXX 205
           RT T+++V R+R+AL  ATH+FF+ + FLYV  PIITT+D EG  E F VTT        
Sbjct: 63  RTTTVASVMRMRDALTHATHNFFRNNEFLYVQVPIITTTDAEGFSERFIVTTLLGKSAEK 122

Query: 206 XXXXXQNPPPSEAEI-----EAAKLVVKERGEAVAQLXXXXXXXXXXXXXXXXLTTAKEN 260
                   P S  EI     EA K  +KE+   V +L                L    E 
Sbjct: 123 V------EPKSVHEIEGVSLEALKAAIKEKSNLVEELKRSDSNKEALVAALWDLRKTNEL 176

Query: 261 VSRLVERSKLKPG 273
             +L  R KL PG
Sbjct: 177 AQQLESREKLHPG 189


>GSVIVT01023072001 assembled CDS
          Length = 447

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 44/49 (89%)

Query: 147 TNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCEGAGEMFQV 195
           TN I AVARI NALA+ATH+FFQ HGFL+ HTPIITTSDCEGAGEMFQ+
Sbjct: 232 TNMIPAVARICNALAYATHTFFQNHGFLHAHTPIITTSDCEGAGEMFQI 280