Jatropha Genome Database

JcCA0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240711.10 - phase: 0 /partial
         (126 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028332001 assembled CDS                                       232   3e-62
GSVIVT01028330001 assembled CDS                                       232   3e-62
GSVIVT01018190001 assembled CDS                                       224   1e-59
GSVIVT01016172001 assembled CDS                                        85   9e-18
GSVIVT01010395001 assembled CDS                                        69   5e-13

>GSVIVT01028332001 assembled CDS
          Length = 332

 Score =  232 bits (592), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 120/126 (95%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARGVMLG DQPVILHMLDI PAAEALNGVKME++D
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGV+ATTDVVEAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALENH 120

Query: 121 AAADCK 126
           AAA+CK
Sbjct: 121 AAANCK 126


>GSVIVT01028330001 assembled CDS
          Length = 332

 Score =  232 bits (592), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 120/126 (95%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARGVMLG DQPVILHMLDI PAAEALNGVKME++D
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGV+ATTDVVEAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALENH 120

Query: 121 AAADCK 126
           AAA+CK
Sbjct: 121 AAANCK 126


>GSVIVT01018190001 assembled CDS
          Length = 332

 Score =  224 bits (570), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 118/126 (93%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA   +RVLVTGAAGQIGYA+VPMIARG+MLGPDQPVILHMLDIEPAAEALNGVKME+ID
Sbjct: 1   MAKDAVRVLVTGAAGQIGYALVPMIARGLMLGPDQPVILHMLDIEPAAEALNGVKMELID 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLL+GV+ATTD +EAC  VN+AVMVGGFPRKEGMERKD+M KNVSIYKAQASALE+H
Sbjct: 61  AAFPLLRGVVATTDAIEACKDVNIAVMVGGFPRKEGMERKDMMKKNVSIYKAQASALEQH 120

Query: 121 AAADCK 126
           AA +CK
Sbjct: 121 AAPNCK 126


>GSVIVT01016172001 assembled CDS
          Length = 437

 Score = 84.7 bits (208), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 68/121 (56%)

Query: 6   LRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMIDAAFPL 65
           + + V+GAAG I   ++  +A G + GPDQP+   +L  E + +AL GV ME+ D+ FPL
Sbjct: 95  INIAVSGAAGMISNHLLFKLAAGEVFGPDQPIAFKLLGSERSFQALEGVAMELEDSLFPL 154

Query: 66  LKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADC 125
           L+ V    D  E    V  A+++G  PR  GMER D++  N  I+  Q  AL   A+ + 
Sbjct: 155 LREVSIGIDPYEVFQDVEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNV 214

Query: 126 K 126
           K
Sbjct: 215 K 215


>GSVIVT01010395001 assembled CDS
          Length = 69

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 34/38 (89%)

Query: 89  GGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCK 126
           GGF RKEGMERK VMSKNVS Y++QASALE HAAA+CK
Sbjct: 25  GGFLRKEGMERKSVMSKNVSTYQSQASALENHAAANCK 62